View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16590_low_11 (Length: 343)
Name: NF16590_low_11
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_low_11 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 23963163 - 23962848
Alignment:
| Q |
18 |
ttttaaatatgataaactacaatgaaattgattatgataaaacattatttaannnnnnnaaatttacaacaactttaaataatacattactcttatcgat |
117 |
Q |
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| T |
23963163 |
ttttaaatatgataaactacgatgaaattgattatgataaaacattatttaatttttttcaatttacaataactttaaataatacattactcttatcgat |
23963064 |
T |
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| Q |
118 |
accatttctaatttaaaacatagttactacaaatattttataacaactcagcgggacaaacatacaatcttcgtgttggaatttcaaaattaaacattag |
217 |
Q |
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| T |
23963063 |
accatttctaatttaaaacatagttactacaaatattttataacaactcagcgggacaaacatacaatcttcgtgttggaatttcaaaattaaacattag |
23962964 |
T |
|
| Q |
218 |
aaaggaccaaactaaagattgattcgagccgataaattcaaactatccttttccaatgaacttacaacttccattcctgcgatcaatttcaatttcacat |
317 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
23962963 |
aaaggacccaactaaagattgagtcgagccgataaattcaaaccatctttttccaatgaacttacaactttcattcatgcgatcaatttcaatttcacat |
23962864 |
T |
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| Q |
318 |
atgtatgtcttctgtg |
333 |
Q |
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| T |
23962863 |
acgtatgtcttttgtg |
23962848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 132382 - 132696
Alignment:
| Q |
19 |
tttaaatatgataaactacaatgaaattgattatgataaaacattatttaannnnnnnaaatttacaacaactttaaataatacattactcttatcgata |
118 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
132382 |
tttaaatataataaactacaatgaaattgattatgataaaacataatttaattcttttcaatttacaacaactttaaaaaatacattactcttatcgata |
132481 |
T |
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| Q |
119 |
ccatttctaatttaaaacatagttactacaaatattttataacaactcagcgggacaaacatacaatcttcgtgttggaatttcaaaattaaacattaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
132482 |
ccatttctaatttaaaacatagttactacaaatattttataacaactcagcggaacaaacatacaatcttcgtgttggaatttcaaaattaaacattaga |
132581 |
T |
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| Q |
219 |
aaggaccaaactaaagattgattcgagccgataaattcaaactatccttttccaatgaacttacaacttccattcctgcgatcaatttcaatttcacata |
318 |
Q |
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||||||| | ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| |
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| T |
132582 |
aaggacccagctaaagattgattcgagacgataaattaaaaccatccttttccaatgaacttacatcttccattcttgcgatcaatttcaatttcagata |
132681 |
T |
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| Q |
319 |
tgtatgtcttctgtg |
333 |
Q |
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|||||||||||||| |
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| T |
132682 |
cgtatgtcttctgtg |
132696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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