View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16590_low_13 (Length: 335)
Name: NF16590_low_13
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 24456070 - 24456374
Alignment:
| Q |
14 |
agacggcataagaactcatccagccattcagaaaaacggatctttggcataaatgataaatcgtcaattttatcatccaataaagccaactgcatttaca |
113 |
Q |
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| T |
24456070 |
agacggcataagaactcatccagccattcagaaaaacggatctttggcataaatgataaatcgtcaattttatcatccaataaagccaactgcatttaca |
24456169 |
T |
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| Q |
114 |
cggtagagtggttaagcatttgttatactagtaccggcaagaagctgtttattcaatatatctagaacccgtttatccaatatatcaagaagttgaaact |
213 |
Q |
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| T |
24456170 |
cggtagagtggttaagcatttgttatactagtaccggcaagaagctgtttattcaatatatctagaacccgtttatccaatatatcaagaagttgaaact |
24456269 |
T |
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| Q |
214 |
cacgtttgaaaatatggaaccaattaattgcatggtagctaaagttttcggagggtcattagcatccatgccaagtaatgcattagataatgaaaccccc |
313 |
Q |
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| T |
24456270 |
cacgtttgaaaatatggaaccaattaattgcatggtagctaaagttttcggagggtcattagcatccatgccaagtaatgcattagataatgaaaccccc |
24456369 |
T |
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| Q |
314 |
acaag |
318 |
Q |
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||||| |
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| T |
24456370 |
acaag |
24456374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 164 - 318
Target Start/End: Original strand, 24473631 - 24473785
Alignment:
| Q |
164 |
attcaatatatctagaacccgtttatccaatatatcaagaagttgaaactcacgtttgaaaatatggaaccaattaattgcatggtagctaaagttttcg |
263 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24473631 |
attcaatatatctagaagacgtttattcaatatatcaagaagttgaaactcacatttgaaaatatggaaccaattaattgcatggtagctaaagttttcg |
24473730 |
T |
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| Q |
264 |
gagggtcattagcatccatgccaagtaatgcattagataatgaaacccccacaag |
318 |
Q |
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| T |
24473731 |
gagggtcattagcatccatgccaagtaatgcattagataatgaaacccccacaag |
24473785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 24473509 - 24473620
Alignment:
| Q |
14 |
agacggcataagaactcatccagccattcagaaaaacggatctttggcataaatgataaatcgtcaattttatcatccaataaagccaactgcatttaca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24473509 |
agacggcataagaactcatccagccattcagaaaaacggatctttggcataaatgataaatcgtcaattttatcatccaataaagccaactgcatttaca |
24473608 |
T |
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| Q |
114 |
cggtagagtggt |
125 |
Q |
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| T |
24473609 |
cagtagagtggt |
24473620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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