View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16590_low_14 (Length: 315)
Name: NF16590_low_14
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 12 - 299
Target Start/End: Original strand, 11034441 - 11034725
Alignment:
| Q |
12 |
acagagaggctggttatattgatcgagctccgcatacgcatacgaaacatctaatttacaaaaactgttgagccaagaaagttcaaatccataaaacatc |
111 |
Q |
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|||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11034441 |
acagtgagcctggttattttgatcgagctccgcatacgcatacgaaacatctaatttacaaaaactgttgagccaagaaagttcaaatccataaaacatc |
11034540 |
T |
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| Q |
112 |
tcacgacggatatccgcgcaagaaannnnnnnnnnnnnnnnnngatcagcaccatcatcttcaacatccaaagaagtgagatacataaactgtatacgac |
211 |
Q |
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| T |
11034541 |
tcacgacggatatccgcgcaagaaatgttgttgttgttgt---gatcagcaccatcatcttcaacatccaaagaagtgagatacataaactgtatacgac |
11034637 |
T |
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| Q |
212 |
acccatctcccagcccgaattccgacagagatttgcgatagctaccaacatagaaagaattcacatcctgtgagtgtgaagttctatt |
299 |
Q |
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| T |
11034638 |
acccatctcccagcccgaattccgacagagatttaccatagctaccaacatagaaagaattcacatcctgtgaatttgaagttctatt |
11034725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 11009179 - 11009312
Alignment:
| Q |
163 |
ccatcatcttcaacatccaaagaagtgagatacataaactgtatacgacacccatctcccagcccgaattccgacagagatttgcgatagctaccaacat |
262 |
Q |
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| T |
11009179 |
ccatcatcttcaacatcccaag---tgagatacataaactctatatgacacccgtctcccaacccaaattccaacagagatttaccatagccaccaacat |
11009275 |
T |
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| Q |
263 |
agaaagaattcacatcctgtgagtgtgaagttctatt |
299 |
Q |
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| T |
11009276 |
agaaagaattcacatcctgtgaatatgaagttctatt |
11009312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 10921628 - 10921684
Alignment:
| Q |
66 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggat |
122 |
Q |
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| T |
10921628 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaagatctcacgacggat |
10921684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 11000444 - 11000378
Alignment:
| Q |
66 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaa |
132 |
Q |
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| T |
11000444 |
tttacaaaggctattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtgcaa |
11000378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 11003424 - 11003354
Alignment:
| Q |
66 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaa |
136 |
Q |
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| T |
11003424 |
tttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgatgaatatccgtacaagaaa |
11003354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 11009103 - 11009139
Alignment:
| Q |
75 |
actgttgagccaagaaagttcaaatccataaaacatc |
111 |
Q |
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| T |
11009103 |
actgttgagccaagaaagttcaaatccataatacatc |
11009139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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