View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16590_low_15 (Length: 309)
Name: NF16590_low_15
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 9213223 - 9212934
Alignment:
| Q |
1 |
gagagagaaactaaaccatagattttatgctttaagatctgtggttccaaatgtttcaaagatggataaagcttctcttttatcagatgcagtggattac |
100 |
Q |
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| T |
9213223 |
gagagagaaactaaaccatagattttacgctttaagatctgtggttccaaatgtttcaaagatggataaagcttctcttttatcagatgcagtggattac |
9213124 |
T |
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| Q |
101 |
atcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaaggaatcgaaaaaggtgaagatggaaacgatggaaattgtcgataataaca |
200 |
Q |
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| T |
9213123 |
atcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaaggaatcgaaaaaggtgaagatggaaacgatggaaattgtcgataataaca |
9213024 |
T |
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| Q |
201 |
gtgcaacgacaacttcaactgtggtagaccaaaaaagaccttgtaatgttaatgcttttgagattgatgtgaagattataggaaatgatg |
290 |
Q |
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| T |
9213023 |
gtgcaacgacaacttcaactgtggtagaccaaaaaagaccttgtaatgttaatgcgtttgagattgatgtgaagattataggaaatgatg |
9212934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 9194807 - 9195105
Alignment:
| Q |
1 |
gagagagaaactaaaccatagattttatgctttaagatctgtggttccaaatgtttcaaagatggataaagcttctcttttatcagatgcagtggattac |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| |||||||| |||||| |
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| T |
9194807 |
gagagagaaactaaaccatagattctatgctttaagatctgtggttccaaacgtttcaaagatggataaagcttctttgttatctgatgcagtagattac |
9194906 |
T |
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| Q |
101 |
atcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaaggaatcgaaaaaggtgaagatggaaacgatggaaattgtcgataataaca |
200 |
Q |
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| T |
9194907 |
atcaatgagttaaaagcaaagatcgaagatttaaaattagggcaacaaaaggaatcgaaaaaggcgatgatgaaaacgatgaaaattgtcgataataata |
9195006 |
T |
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| Q |
201 |
gtgcaacgacaacttcaactgtggtagaccaaaaaagaccttgt---------aatgttaatgcttttgagattgatgtgaagattataggaaatgatg |
290 |
Q |
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|||||||||||||||||| ||||||||||||||| | |||| || ||| ||| |||||| ||||||||||||||||| |||||| |||||| |
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| T |
9195007 |
gtgcaacgacaacttcaattgtggtagaccaaaacaaacctagttgtagtaagaatcttattgctttagagattgatgtgaagatcataggacatgatg |
9195105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 17370995 - 17371053
Alignment:
| Q |
93 |
tggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaag |
151 |
Q |
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| T |
17370995 |
tggattacatcaatgagttgaaagcaaagattgaaaatttagaattagtgcaacaaaag |
17371053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 24748745 - 24748802
Alignment:
| Q |
94 |
ggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaag |
151 |
Q |
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| T |
24748745 |
ggattacatctatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaag |
24748802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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