View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16590_low_16 (Length: 303)
Name: NF16590_low_16
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_low_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 38514509 - 38514810
Alignment:
| Q |
1 |
tttttcttcatatattttgttcgcaactgggaagtgttgacaaaaggctcattataccctccggattgaggaacaacactggacagaacctgaaaaacgg |
100 |
Q |
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| T |
38514509 |
tttttcttcatatattttgttagcaactgggaagtgttgacaaaaggctcattataccctccggattgaggaacaacactggacagaacctgaaaaacgg |
38514608 |
T |
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| Q |
101 |
ctttggaagcaccgaaagacatgctggttttaaaataaggaaccctaccacctaaaatgttacctcctgtagagtaaaaattgagattacaaccaatgag |
200 |
Q |
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| T |
38514609 |
ctttggaagcaccgaaagacatgctggttttaaaataaggaaccctaccacctaaaattttacctcctgtagagtaaaaattgagattacaaccaatgag |
38514708 |
T |
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| Q |
201 |
tgagaactacttaacaaaaattggatgataatagcattgcaatttcaattattaaaaatattggctgagatggtaacaaagacacgaacaccgaacacga |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38514709 |
tgagaactacttaac-aaaattggatgataatagcattgcaatttcaattattaaaaatattggctgagatggtaacaaagacacgaataccgaacacga |
38514807 |
T |
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| Q |
301 |
cac |
303 |
Q |
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||| |
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| T |
38514808 |
cac |
38514810 |
T |
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