View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16590_low_17 (Length: 293)
Name: NF16590_low_17
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 43101555 - 43101803
Alignment:
| Q |
29 |
tctagctgtctgcctttttgtcgtacgaggggctatattcttaccataaatccatcttctttagaagtaaagtgggcgaacgagaatcagataaatctga |
128 |
Q |
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| T |
43101555 |
tctagctgtctgcctttttgtcgtacgaggggctatattcttaccataaatccatcttctttagaagtaaagtgggcgaacaagaatcagataaatctga |
43101654 |
T |
|
| Q |
129 |
tcccagttcagctgcaacgccttatcatcaccatccgcctcaattgtcattgctgcatcaatatgtagcttaaactcctttctcaaccagctgaaacatg |
228 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43101655 |
tcccagttcagctgcaatgcctcatcatcaccatccgcctcaattgtcattgctgcatcaatatgtagcttaaactcctttctcaaccagctgaaacatg |
43101754 |
T |
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| Q |
229 |
cacgagaaacctttgtaacatgtacctagaactcatcctcatccacttc |
277 |
Q |
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||| ||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
43101755 |
cacaagaaaccttggtaacatgtacctggaactcatcctcatccacttc |
43101803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 3506148 - 3506261
Alignment:
| Q |
12 |
gaacctgtgatcaaaagtctagctgtctgcctttttgtcgtacgaggggctatattcttaccataaatccatcttctttagaagtaaagtgggcgaacga |
111 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3506148 |
gaacctctaatcaaaagtctagctgtctgcctttttgtcgtacgaggggctatattcttaccataaatccatcttctttagaagtaaagtgggcgaacgt |
3506247 |
T |
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| Q |
112 |
gaatcagataaatc |
125 |
Q |
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|||||||||||||| |
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| T |
3506248 |
gaatcagataaatc |
3506261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 21947861 - 21947933
Alignment:
| Q |
12 |
gaacctgtgatcaaaagtctagctgtctgcctttttgtcgtacgaggggctatattcttaccataaatccatc |
84 |
Q |
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|||||| | |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21947861 |
gaacctctaatcaaaagtctacctgtctgcctttttgtcgtacgcggggctatattcttaccataaatccatc |
21947933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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