View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16590_low_20 (Length: 225)
Name: NF16590_low_20
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 34306068 - 34305877
Alignment:
| Q |
12 |
caaaggcatcaaaaatcaaaagagggttggaattatggaatgagcaatacagcttttttatagcatatatgatatgatatgatatgtgtgtggnnnnnnn |
111 |
Q |
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| T |
34306068 |
caaaggcatcaaaaaccaaaagagggttggaattatggaatgagcaatacagcttttttatagcatatatgatatgatatg-----tgtgtggaaaaaaa |
34305974 |
T |
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| Q |
112 |
tggaagcactacaagtacttctaaccaatacaccaaagacaagagctaaataaagtggcaacatctaaaaagagaaaaggaaacacatacaattatt |
208 |
Q |
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| T |
34305973 |
tggaagcactacaagtacttctaaccaatacaccaaagacaagagctaaataaagtggcaacatctaaagagagaaaaggaaacacatacaattatt |
34305877 |
T |
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