View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16590_low_21 (Length: 221)

Name: NF16590_low_21
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16590_low_21
NF16590_low_21
[»] chr1 (24 HSPs)
chr1 (75-161)||(36930630-36930716)
chr1 (90-160)||(44730756-44730826)
chr1 (85-161)||(4604640-4604716)
chr1 (90-161)||(48872490-48872561)
chr1 (90-161)||(49621472-49621543)
chr1 (90-161)||(16658550-16658625)
chr1 (91-161)||(51339590-51339660)
chr1 (90-161)||(27352741-27352812)
chr1 (84-139)||(30687185-30687240)
chr1 (90-148)||(25061857-25061915)
chr1 (90-134)||(40595943-40595987)
chr1 (98-161)||(30530471-30530534)
chr1 (90-161)||(50527946-50528017)
chr1 (90-161)||(51172196-51172267)
chr1 (93-161)||(25098683-25098748)
chr1 (89-161)||(43611970-43612042)
chr1 (93-129)||(51571661-51571697)
chr1 (94-161)||(11460905-11460972)
chr1 (90-161)||(38019392-38019462)
chr1 (90-148)||(40605309-40605368)
chr1 (87-116)||(35043605-35043634)
chr1 (94-134)||(5043186-5043226)
chr1 (90-161)||(42299076-42299148)
chr1 (88-116)||(43640873-43640901)
[»] chr8 (14 HSPs)
chr8 (84-161)||(1796594-1796671)
chr8 (90-139)||(12045542-12045591)
chr8 (93-148)||(5782912-5782967)
chr8 (90-148)||(36740436-36740494)
chr8 (90-161)||(6005055-6005126)
chr8 (90-161)||(44380503-44380574)
chr8 (86-119)||(9314565-9314598)
chr8 (83-149)||(20853040-20853108)
chr8 (90-139)||(42443239-42443288)
chr8 (94-148)||(20284831-20284886)
chr8 (94-148)||(21071460-21071515)
chr8 (88-161)||(32725669-32725742)
chr8 (90-134)||(69515-69559)
chr8 (90-161)||(6849149-6849221)
[»] chr5 (18 HSPs)
chr5 (89-161)||(7144686-7144758)
chr5 (89-161)||(9636046-9636118)
chr5 (90-161)||(24792563-24792634)
chr5 (90-139)||(15639518-15639567)
chr5 (90-161)||(36581356-36581427)
chr5 (90-161)||(28904103-28904178)
chr5 (90-161)||(28940498-28940573)
chr5 (90-161)||(91326-91397)
chr5 (89-161)||(582757-582829)
chr5 (89-149)||(26627453-26627513)
chr5 (90-134)||(38387848-38387892)
chr5 (90-161)||(5698217-5698288)
chr5 (90-161)||(26626708-26626779)
chr5 (87-161)||(19437368-19437442)
chr5 (90-135)||(32732005-32732050)
chr5 (90-126)||(20040920-20040956)
chr5 (89-161)||(13734248-13734320)
chr5 (83-135)||(39595411-39595463)
[»] scaffold0166 (1 HSPs)
scaffold0166 (90-161)||(34946-35017)
[»] chr7 (12 HSPs)
chr7 (90-161)||(9031318-9031389)
chr7 (90-148)||(2469816-2469874)
chr7 (88-161)||(18157072-18157145)
chr7 (90-160)||(30941289-30941359)
chr7 (90-148)||(35072134-35072192)
chr7 (90-161)||(25940556-25940627)
chr7 (90-148)||(35098476-35098534)
chr7 (92-146)||(43107738-43107792)
chr7 (90-144)||(6655506-6655560)
chr7 (90-148)||(43079518-43079576)
chr7 (102-147)||(43444753-43444798)
chr7 (90-161)||(27688748-27688819)
[»] chr4 (17 HSPs)
chr4 (90-161)||(46567040-46567111)
chr4 (89-161)||(28676042-28676114)
chr4 (89-161)||(33438156-33438228)
chr4 (89-149)||(40847490-40847550)
chr4 (87-135)||(7795137-7795185)
chr4 (90-134)||(37977253-37977297)
chr4 (94-161)||(12638935-12639002)
chr4 (86-125)||(32621764-32621803)
chr4 (90-148)||(55510983-55511041)
chr4 (85-138)||(11997784-11997837)
chr4 (90-127)||(41010060-41010097)
chr4 (89-161)||(23094487-23094558)
chr4 (91-126)||(48783940-48783975)
chr4 (83-161)||(5234353-5234431)
chr4 (93-161)||(26440774-26440842)
chr4 (94-161)||(34259937-34260005)
chr4 (88-116)||(44495882-44495910)
[»] chr3 (19 HSPs)
chr3 (90-161)||(32795947-32796018)
chr3 (90-161)||(1901815-1901886)
chr3 (90-161)||(1911261-1911332)
chr3 (90-148)||(7867598-7867656)
chr3 (91-148)||(462291-462348)
chr3 (86-161)||(981581-981656)
chr3 (90-161)||(25959431-25959502)
chr3 (90-161)||(31326819-31326890)
chr3 (90-161)||(44593077-44593148)
chr3 (90-139)||(32981010-32981059)
chr3 (90-146)||(1295458-1295514)
chr3 (90-148)||(34607808-34607866)
chr3 (90-148)||(50294013-50294071)
chr3 (86-135)||(1031312-1031361)
chr3 (87-116)||(8869026-8869055)
chr3 (93-138)||(16267799-16267844)
chr3 (125-161)||(7138-7174)
chr3 (87-115)||(20216106-20216134)
chr3 (93-161)||(41717374-41717442)
[»] scaffold0184 (1 HSPs)
scaffold0184 (87-161)||(16480-16554)
[»] scaffold0078 (1 HSPs)
scaffold0078 (87-161)||(56290-56364)
[»] chr2 (16 HSPs)
chr2 (88-161)||(4842406-4842479)
chr2 (90-161)||(15283138-15283209)
chr2 (90-148)||(21805675-21805733)
chr2 (90-148)||(40951314-40951372)
chr2 (92-161)||(5167633-5167702)
chr2 (92-161)||(19668078-19668147)
chr2 (90-134)||(19637365-19637409)
chr2 (90-134)||(19835958-19836002)
chr2 (87-135)||(305854-305902)
chr2 (93-161)||(30856918-30856986)
chr2 (91-134)||(11126601-11126644)
chr2 (99-161)||(13553254-13553316)
chr2 (94-131)||(13553310-13553347)
chr2 (86-127)||(32128274-32128315)
chr2 (90-161)||(36763408-36763480)
chr2 (94-161)||(43791683-43791751)
[»] chr6 (7 HSPs)
chr6 (89-161)||(8173200-8173272)
chr6 (88-134)||(25567380-25567426)
chr6 (90-148)||(32730013-32730071)
chr6 (90-161)||(21443799-21443870)
chr6 (86-115)||(8645467-8645496)
chr6 (90-134)||(25561831-25561875)
chr6 (90-134)||(26101345-26101389)
[»] scaffold0002 (1 HSPs)
scaffold0002 (90-148)||(440842-440900)
[»] scaffold0003 (1 HSPs)
scaffold0003 (90-161)||(337229-337300)
[»] scaffold0115 (1 HSPs)
scaffold0115 (96-160)||(15084-15147)


Alignment Details
Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 36930630 - 36930716
Alignment:
Q  75 gaaaaagaaaaatatgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||| ||||| | |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||  |||||||||||    
T  36930630 gaaaaaaaaaaaaaagagcaatgatatttgaacaaccattttgtacaacctttttgacaaccttctttttctctctttttattggtc 36930716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 44730826 - 44730756
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggt 160  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||||    
T  44730826 gagcaatgatatttgaacaaccatttggtacaacctttttgacaaccttctttttctcttttttcattggt 44730756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 4604716 - 4604640
Alignment:
Q  85 aatatgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||  ||| |||||||    
T  4604716 aatatgagcaatgatatttgaacaacgatttggtacaacctgtttgacaaccttctttttctctcttttcattggtc 4604640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 48872561 - 48872490
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||||  ||| |||||||    
T  48872561 gagcaatgatatttgaacaaccatttgatacaacctatttgacaaccttccttttctctcttttcattggtc 48872490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 49621543 - 49621472
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||||| ||| || |||||||| |||| ||||||||  |||||||||||    
T  49621543 gagcaatgatatttgaacaaccatttggtacaatctatttgacaatcttcattttctctctttttattggtc 49621472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 16658625 - 16658550
Alignment:
Q  90 gagcaatgatatttgaacaacca----tttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||||||||||||    |||||| |||||| ||||||||||||| ||||||||| |||||||||||    
T  16658625 gagcaatgatatttgaacaaccaattatttggtacaacctatttgacaaccttccttttctctttttttattggtc 16658550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 51339590 - 51339660
Alignment:
Q  91 agcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||  ||| |||||||    
T  51339590 agcaatgatatttgaacaactatttggtacaacctatttgacaaccttcattttctctcttttcattggtc 51339660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 27352812 - 27352741
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||||| |||||| || |||||||||  ||||||||  ||| |||||||    
T  27352812 gagcaatgatatttgaacaaccatttggtacaacctattcgacaacctttcttttctctcttttcattggtc 27352741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 30687240 - 30687185
Alignment:
Q  84 aaatatgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttc 139  Q
    ||||| ||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  30687240 aaataagagcaatgatatttgaacaaccatttggtacaaattttttgacaaccttc 30687185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 25061915 - 25061857
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    ||||||||||||||||||||||||||| | ||| || ||||||||||||| ||||||||    
T  25061915 gagcaatgatatttgaacaaccatttgatacaatctatttgacaaccttctttttctct 25061857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 40595943 - 40595987
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaa 134  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  40595943 gagcaatgatatttgaacaaccatttgatacaacctttttgacaa 40595987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 30530471 - 30530534
Alignment:
Q  98 atatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||| |||||| ||||||||| ||| ||||||||  ||| |||||||    
T  30530471 atatttgaacaaccatttggtacaacctatttgacaactttccttttctctcttttcattggtc 30530534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 50527946 - 50528017
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||| ||||||||||||||||||| | ||| || ||||||||||||| ||||||||  ||| |||||||    
T  50527946 gagcaatcatatttgaacaaccatttgctacaatctatttgacaaccttctttttctctcttttcattggtc 50528017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 51172196 - 51172267
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||||||||| |||||||| ||| || |||||||| |||  |||||||||  ||||||||||    
T  51172196 gagcaatgatatttgaacaatcatttggtacaatctatttgacaatctttcttttctctttgtttattggtc 51172267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 25098683 - 25098748
Alignment:
Q  93 caatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||||||||||||||| |||||   |||||||||||| ||||||||  ||| |||||||    
T  25098683 caatgatatttgaacaaccatttggtacaacc---ttgacaaccttccttttctctcttttcattggtc 25098748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 43611970 - 43612042
Alignment:
Q  89 tgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||| |||||||||||| |||||| ||||| || |||| | ||||||  ||| |||||||    
T  43611970 tgagcaatgatatttgaccaaccatttggtacaacctatttgataatcttcctcttctctcttttcattggtc 43612042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 51571697 - 51571661
Alignment:
Q  93 caatgatatttgaacaaccatttggtgcaaccttttt 129  Q
    |||||||||||||||||||||||||| ||||||||||    
T  51571697 caatgatatttgaacaaccatttggtacaaccttttt 51571661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 11460972 - 11460905
Alignment:
Q  94 aatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||| ||||| | |||| ||||||||||||||| || ||| |  |||||||||||    
T  11460972 aatgatatttgaacaacaatttgatacaacttttttgacaaccttctttctctttctttttattggtc 11460905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 38019392 - 38019462
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||| ||||||||||||||||||||||| |||  ||  ||||||||||| ||||||||| | |||||||||    
T  38019392 gagcagtgatatttgaacaaccatttggtacaa-tttgatgacaaccttctttttctcttttgttattggtc 38019462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 40605309 - 40605368
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggt-gcaacctttttgacaaccttcgttttctct 148  Q
    ||||||||||||||||||||||||||| |  |||| ||| ||||||||||| ||||||||    
T  40605309 gagcaatgatatttgaacaaccatttgctaacaacttttatgacaaccttctttttctct 40605368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 116
Target Start/End: Original strand, 35043605 - 35043634
Alignment:
Q  87 tatgagcaatgatatttgaacaaccatttg 116  Q
    ||||||||||||||||||||||||||||||    
T  35043605 tatgagcaatgatatttgaacaaccatttg 35043634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 5043226 - 5043186
Alignment:
Q  94 aatgatatttgaacaaccatttggtgcaacctttttgacaa 134  Q
    ||||||||||||||||||||||||| |||| | ||||||||    
T  5043226 aatgatatttgaacaaccatttggtacaacttatttgacaa 5043186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 42299076 - 42299148
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaaccttttt-gacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||  |||| || |||| ||||| ||||| |||| ||||||||  |||||||||||    
T  42299076 gagcaatgatatttgaacaattatttagtacaacattttttgacaatcttctttttctctctttttattggtc 42299148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 43640873 - 43640901
Alignment:
Q  88 atgagcaatgatatttgaacaaccatttg 116  Q
    |||||||||||||||||||||||||||||    
T  43640873 atgagcaatgatatttgaacaaccatttg 43640901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 1796671 - 1796594
Alignment:
Q  84 aaatatgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||||  ||| |||||||    
T  1796671 aaatatgagcaatgatatttgaacaaccatttgttacaacctatttgacaaccttccttttctctcttttcattggtc 1796594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 12045542 - 12045591
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttc 139  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||    
T  12045542 gagcaatgatatttgaacaaccatttggtataacctttttgacaaccttc 12045591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 5782967 - 5782912
Alignment:
Q  93 caatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||| ||||||||    
T  5782967 caatgatatttgaacaaccatttggtacaacctatttgacaactttcattttctct 5782912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 36740494 - 36740436
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    ||||||||||||||||||||||||||| | ||| || ||||||||||||| ||||||||    
T  36740494 gagcaatgatatttgaacaaccatttgatacaatctatttgacaaccttcattttctct 36740436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 6005126 - 6005055
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||| |||||||||||||||||| |||| | ||||||||| ||| ||||||||  ||| |||||||    
T  6005126 gagcaatgatgtttgaacaaccatttggtacaacttatttgacaactttccttttctctcttttcattggtc 6005055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 44380503 - 44380574
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||| |||||||| |||||| |||| || |||||||||||||||||||  ||||||||| ||| |||||||    
T  44380503 gagcactgatatttaaacaactatttagtacaacctttttgacaacctttcttttctcttttttgattggtc 44380574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 9314598 - 9314565
Alignment:
Q  86 atatgagcaatgatatttgaacaaccatttggtg 119  Q
    ||||||||||||||||||||||||||||||||||    
T  9314598 atatgagcaatgatatttgaacaaccatttggtg 9314565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 20853108 - 20853040
Alignment:
Q  83 aaaatatgagcaatgatatttgaacaaccatttggtgcaacc--tttttgacaaccttcgttttctctt 149  Q
    |||||||||| |||||||||||||||| |||||||| ||| |  |||||||||| |||| |||||||||    
T  20853108 aaaatatgagaaatgatatttgaacaatcatttggtacaatctttttttgacaatcttctttttctctt 20853040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 42443288 - 42443239
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttc 139  Q
    ||||||||||||||||||||| ||||||| |||  |||||||||||||||    
T  42443288 gagcaatgatatttgaacaactatttggtacaaattttttgacaaccttc 42443239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 20284886 - 20284831
Alignment:
Q  94 aatgatatttgaacaaccatttggtg-caacctttttgacaaccttcgttttctct 148  Q
    ||||||||||||||||||||||| || |||| ||| ||||||||||| ||||||||    
T  20284886 aatgatatttgaacaaccatttgatgacaacttttgtgacaaccttctttttctct 20284831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 21071515 - 21071460
Alignment:
Q  94 aatgatatttgaacaaccatttggtg-caacctttttgacaaccttcgttttctct 148  Q
    ||||||||||||||||||||||| || |||| ||| ||||||||||| ||||||||    
T  21071515 aatgatatttgaacaaccatttgatgacaacttttgtgacaaccttctttttctct 21071460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 32725669 - 32725742
Alignment:
Q  88 atgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||||| |||||| |||| ||  || || ||||||||||||| ||||||||  ||| |||||||    
T  32725669 atgagcaatgatatttaaacaactatttagtataatctatttgacaaccttccttttctctcttttcattggtc 32725742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 69515 - 69559
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaa 134  Q
    |||||||| |||||||||||||||||| | |||||| ||||||||    
T  69515 gagcaatgctatttgaacaaccatttgatacaacctatttgacaa 69559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 6849149 - 6849221
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggt-gcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||| ||||||  |  |||| ||| ||||||| ||| ||||||||| |||||||||||    
T  6849149 gagcaatgatatttgaacagccattttctaacaacttttatgacaactttctttttctctttttttattggtc 6849221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 7144758 - 7144686
Alignment:
Q  89 tgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||| |||||||||| | |||||||||||||||||||| ||||||||  |||||||||||    
T  7144758 tgagcaatgatatttgagcaaccatttgatacaacctttttgacaaccttctttttctctctttttattggtc 7144686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 9636046 - 9636118
Alignment:
Q  89 tgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||  ||| |||||||    
T  9636046 tgagcaatgatatttgaacaaccatttggtacaacctatttgacaaccttcattttctctcttttcattggtc 9636118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 24792634 - 24792563
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||  ||| |||||||    
T  24792634 gagcaatgatatttgaacaaccatttggtacaacctatttgacaaccttcattttctctcttttcattggtc 24792563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 15639567 - 15639518
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttc 139  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15639567 gagcaatgatatttgaacaaccatttggtacaacctttttgacaaccttc 15639518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 36581356 - 36581427
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||| |||| |||  |||||||||||    
T  36581356 gagcaatgatatttgaacaaccattttgtacaacctatttgacaaccttcattttttctctttttattggtc 36581427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 28904178 - 28904103
Alignment:
Q  90 gagcaatgatatttgaacaacca----tttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||||||||||||    |||||| |||||| ||||||||||||| ||||||||| |||||||||||    
T  28904178 gagcaatgatatttgaacaaccaattatttggtacaacctatttgacaaccttccttttctctttttttattggtc 28904103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 28940573 - 28940498
Alignment:
Q  90 gagcaatgatatttgaacaacca----tttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||||||||||||    |||||| |||||| ||||||||||||| ||||||||| |||||||||||    
T  28940573 gagcaatgatatttgaacaaccaattatttggtacaacctatttgacaaccttccttttctctttttttattggtc 28940498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 91397 - 91326
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||||||  ||||||||  ||| |||||||    
T  91397 gagcaatgatatttgaacaaccatttgatacaacctatttgacaacctttcttttctctcttttcattggtc 91326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 582757 - 582829
Alignment:
Q  89 tgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||| |||||||| |||  ||||||||||||||| || |||||  ||| |||||||    
T  582757 tgagcaatgatatttgaacaatcatttggtacaagatttttgacaaccttctttctctctcttttcattggtc 582829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 26627513 - 26627453
Alignment:
Q  89 tgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctctt 149  Q
    |||||||||||||||||||||| ||||||| |||| ||  ||||||||||| |||||||||    
T  26627513 tgagcaatgatatttgaacaactatttggtacaactttcatgacaaccttctttttctctt 26627453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 38387892 - 38387848
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaa 134  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||    
T  38387892 gagcaatgatatttgaacaaccatttggtacaacctttatgacaa 38387848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 5698217 - 5698288
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||| |||||| |||||||| |||| ||  ||||||||||| ||||||||| | |||||||||    
T  5698217 gagcaatgatattagaacaatcatttggtacaactttcatgacaaccttctttttctcttttgttattggtc 5698288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 26626708 - 26626779
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||| | |||| ||  ||||||||||  ||||||||| | |||||||||    
T  26626708 gagcaatgatatttgaacaaccatttgttacaactttcatgacaaccttttttttctcttttgttattggtc 26626779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 19437442 - 19437368
Alignment:
Q  87 tatgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||| ||||||||||||||| |||| || |||| ||||||||||||||  ||||||||  ||| |||||||    
T  19437442 tatgagcactgatatttgaacaactatttagtacaacatttttgacaacctttcttttctctcttttgattggtc 19437368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 32732005 - 32732050
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaac 135  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||    
T  32732005 gagcaatgatatttgaacaaccatttggtacaatctttatgacaac 32732050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 20040956 - 20040920
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctt 126  Q
    ||||||||||||||||||||||||||||| |||||||    
T  20040956 gagcaatgatatttgaacaaccatttggtacaacctt 20040920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 13734248 - 13734320
Alignment:
Q  89 tgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||  ||| |||||||||||||||| ||| || ||||||||| ||| ||||||||  ||| |||||||    
T  13734248 tgagcaattgtatatgaacaaccatttggtacaatctatttgacaactttccttttctctcttttcattggtc 13734320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 39595463 - 39595411
Alignment:
Q  83 aaaatatgagcaatgatatttgaacaaccatttggtgcaacctttttgacaac 135  Q
    ||||| |||| ||||||||||||||||||||||| | |||| ||| |||||||    
T  39595463 aaaatttgagtaatgatatttgaacaaccatttgatacaacttttgtgacaac 39595411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 35017 - 34946
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||  ||| |||||||    
T  35017 gagcaatgatatttgaacaaccatttggtacaacctatttgacaaccttcattttctctcttttcattggtc 34946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 9031389 - 9031318
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||||| ||| || ||||||||||||| ||||||||  |||||||||||    
T  9031389 gagcaatgatatttgaacaaccatttggtacaatctatttgacaaccttcattttctctctttttattggtc 9031318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 2469874 - 2469816
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||    
T  2469874 gagcaatgatatttgaacaaccatttggtacaacctatttgacaaccttccttttctct 2469816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 18157072 - 18157145
Alignment:
Q  88 atgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||  ||| |||||||    
T  18157072 atgagcaatgatatttgaacaactatttggtacaacctatttgacaaccttccttttctctcttttcattggtc 18157145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 30941359 - 30941289
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggt 160  Q
    ||||||| |||||||||||||||||| || |||||| ||||||||||||| ||||||||| ||| ||||||    
T  30941359 gagcaatcatatttgaacaaccatttagtacaacctatttgacaaccttccttttctcttttttcattggt 30941289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 35072134 - 35072192
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||    
T  35072134 gagcaatgatatttgaacaactatttggtacaacctttttgacaatcttcattttctct 35072192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 25940556 - 25940627
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||| ||||||| ||| || ||||||||||||| ||||||||  ||| |||||||    
T  25940556 gagcaatgatatttgaacaactatttggtacaatctatttgacaaccttcattttctctcttttcattggtc 25940627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 35098476 - 35098534
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||| |||| ||||||||    
T  35098476 gagcaatgataattgaacaactatttggtacaacctttttgacaatcttcattttctct 35098534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 43107792 - 43107738
Alignment:
Q  92 gcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttct 146  Q
    ||||||||||||||||||||||||||| |||||| ||| ||||||||| ||||||    
T  43107792 gcaatgatatttgaacaaccatttggtacaacctatttaacaaccttccttttct 43107738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 6655506 - 6655560
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgtttt 144  Q
    |||||||||||||| |||||||||||||| ||| ||||||||||| |||| ||||    
T  6655506 gagcaatgatatttaaacaaccatttggtacaatctttttgacaatcttcttttt 6655560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 43079518 - 43079576
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    |||||||||||||||||||||||||||||  ||| | ||||||||||||  ||||||||    
T  43079518 gagcaatgatatttgaacaaccatttggtaaaacttatttgacaacctttcttttctct 43079576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 43444798 - 43444753
Alignment:
Q  102 ttgaacaaccatttggtgcaacctttttgacaaccttcgttttctc 147  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||||    
T  43444798 ttgaacaaccatttggtacaacctatttgacaaccttcattttctc 43444753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 27688819 - 27688748
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||| ||||  ||||||| ||| || ||||||||||||| ||||||||  ||| |||||||    
T  27688819 gagcaatgatatttgtacaattatttggtacaatctatttgacaaccttccttttctctcttttcattggtc 27688748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 46567111 - 46567040
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||  ||| |||||||    
T  46567111 gagcaatgatatttgaacaaccatttggtacaacctatttgacaaccttccttttctctcttttcattggtc 46567040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 28676042 - 28676114
Alignment:
Q  89 tgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||  ||| |||||||    
T  28676042 tgagcaatgatatttaaacaaccattttgtacaacctttttgacaaccttctttttctctcttttcattggtc 28676114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 33438228 - 33438156
Alignment:
Q  89 tgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||| |||||||||||||| |||| ||||||| ||||||| ||||||||  |||||||||||    
T  33438228 tgagcaatgatatttaaacaaccatttggtacaacttttttgataaccttcattttctctctttttattggtc 33438156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 40847550 - 40847490
Alignment:
Q  89 tgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctctt 149  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||| |||||||||    
T  40847550 tgagcaatgatatttgaacaaccatttgacacaacctttttgacaaccttctttttctctt 40847490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 7795185 - 7795137
Alignment:
Q  87 tatgagcaatgatatttgaacaaccatttggtgcaacctttttgacaac 135  Q
    |||||||||||||||||||||||||||||| | |||||||| |||||||    
T  7795185 tatgagcaatgatatttgaacaaccatttgatacaacctttatgacaac 7795137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 37977297 - 37977253
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaa 134  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||    
T  37977297 gagcaatgatatttgaacaaccatttggtacaacatttttgacaa 37977253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 12639002 - 12638935
Alignment:
Q  94 aatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||| ||||| | |||||| ||||||||||||| ||||||||  ||| |||||||    
T  12639002 aatgatatttgaacaactatttgttacaacctatttgacaaccttcattttctctcttttcattggtc 12638935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 32621803 - 32621764
Alignment:
Q  86 atatgagcaatgatatttgaacaaccatttggtgcaacct 125  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  32621803 atatgagcaatgatatttgaacaaccatttggtacaacct 32621764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 55511041 - 55510983
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    ||||||||||||||||||||||||||||| |||| | ||||| ||| ||| ||||||||    
T  55511041 gagcaatgatatttgaacaaccatttggtacaacttatttgaaaactttccttttctct 55510983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 11997837 - 11997784
Alignment:
Q  85 aatatgagcaatgatatttgaacaaccatttggtgcaacctttttgacaacctt 138  Q
    |||| ||| ||||||||||||||||||||||||| |||||| ||||||| ||||    
T  11997837 aataagagtaatgatatttgaacaaccatttggtacaacctatttgacatcctt 11997784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 41010060 - 41010097
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaaccttt 127  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  41010060 gagcaatgatatttgaacaaccatttggtacaaccttt 41010097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 23094558 - 23094487
Alignment:
Q  89 tgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||||||||||||||||||| |||  ||  || |||||||| ||||||||| | |||||||||    
T  23094558 tgagcaatgatatttgaacaaccatttggtacaa-tttgatggcaaccttctttttctcttttgttattggtc 23094487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 48783975 - 48783940
Alignment:
Q  91 agcaatgatatttgaacaaccatttggtgcaacctt 126  Q
    |||||||||||||||||||||||||||| |||||||    
T  48783975 agcaatgatatttgaacaaccatttggtacaacctt 48783940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 5234353 - 5234431
Alignment:
Q  83 aaaatatgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||| | ||||||||||||||||||||| | |||| ||| ||||||  ||  ||||||||  |||||||||||    
T  5234353 aaaatatgagtagtgatatttgaacaaccatttgatacaacttttgtgacaattttttttttctctctttttattggtc 5234431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 26440842 - 26440774
Alignment:
Q  93 caatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||| || ||||| || ||| || ||||||||||||  |||||| || |||||||||||    
T  26440842 caatgatatttgaagaatcattttgtacaatctatttgacaacctttattttctttttttttattggtc 26440774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 34260005 - 34259937
Alignment:
Q  94 aatgatatttgaacaaccatttggtg-caacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||| |||||||||||||| |||| ||| |||||| |||| ||||||||  | |||||||||    
T  34260005 aatgatatttgtacaaccatttggtgacaacttttgtgacaaacttctttttctctcttcttattggtc 34259937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 44495882 - 44495910
Alignment:
Q  88 atgagcaatgatatttgaacaaccatttg 116  Q
    |||||||||||||||||||||||||||||    
T  44495882 atgagcaatgatatttgaacaaccatttg 44495910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 32796018 - 32795947
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||| ||| ||||||||  |||||||||||    
T  32796018 gagcaatgatatttgaacaaccatttggtacaacctatttgacaactttcattttctctctttttattggtc 32795947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 1901815 - 1901886
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||||  ||| |||||||    
T  1901815 gagcaataatatttgaacaaccatttggtacaacctatttgacaaccttccttttctctcttttcattggtc 1901886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 1911261 - 1911332
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||||  ||| |||||||    
T  1911261 gagcaataatatttgaacaaccatttggtacaacctatttgacaaccttccttttctctcttttcattggtc 1911332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 7867598 - 7867656
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    ||||||||||||||||||||||||||||| ||| || ||||||||||||| ||||||||    
T  7867598 gagcaatgatatttgaacaaccatttggtacaatctatttgacaaccttcattttctct 7867656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 462291 - 462348
Alignment:
Q  91 agcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||  ||||||||    
T  462291 agcaatgatatttgaacaaccatttggtacaacctatttgacaacctttcttttctct 462348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 981656 - 981581
Alignment:
Q  86 atatgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||| ||||||||||||||||||||||||| || || ||| ||||||||||||| ||||||||  ||| |||||||    
T  981656 atataagcaatgatatttgaacaaccatttagtacagcctatttgacaaccttcattttctctcttttcattggtc 981581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 25959431 - 25959502
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||| ||| ||||||||  ||| |||||||    
T  25959431 gagcaatgatatttgaacaaccatttgatacaacctatttgacaactttcattttctctcttttcattggtc 25959502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 31326890 - 31326819
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||||| ||| || |||||||| |||| ||||||||  ||| |||||||    
T  31326890 gagcaatgatatttgaacaaccatttggtacaatctatttgacaatcttcattttctctcttttcattggtc 31326819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 44593148 - 44593077
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||| || |||||||| |||| ||||||||||||||| ||||||||  ||| |||||||    
T  44593148 gagcaatgatatttgaataatcatttggtacaacttttttgacaaccttcattttctctattttcattggtc 44593077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 32981010 - 32981059
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttc 139  Q
    ||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  32981010 gagcaatgatatttgaacaaccatttggtacaaattttttgacaaccttc 32981059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 1295514 - 1295458
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttct 146  Q
    ||||||||||||||||||||||||||| | ||||  |||||||||||||| ||||||    
T  1295514 gagcaatgatatttgaacaaccatttgctacaacaattttgacaaccttctttttct 1295458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 34607808 - 34607866
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    |||||| |||||||||||||| ||||||| ||| || ||||||||||||| ||||||||    
T  34607808 gagcaacgatatttgaacaactatttggtacaatctatttgacaaccttcattttctct 34607866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 50294013 - 50294071
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    |||||||||||||| |||||||||||||| |||| | ||||||||| ||| ||||||||    
T  50294013 gagcaatgatattttaacaaccatttggtacaacttatttgacaactttctttttctct 50294071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 1031312 - 1031361
Alignment:
Q  86 atatgagcaatgatatttgaacaaccatttggtgcaacctttttgacaac 135  Q
    ||||||||||||||||||||||||  ||||||| |||| ||| |||||||    
T  1031312 atatgagcaatgatatttgaacaattatttggtacaacttttatgacaac 1031361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 8869055 - 8869026
Alignment:
Q  87 tatgagcaatgatatttgaacaaccatttg 116  Q
    ||||||||||||||||||||||||||||||    
T  8869055 tatgagcaatgatatttgaacaaccatttg 8869026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 16267799 - 16267844
Alignment:
Q  93 caatgatatttgaacaaccatttggtgcaacctttttgacaacctt 138  Q
    |||| |||||||||||| |||||||| |||| ||||||||||||||    
T  16267799 caataatatttgaacaatcatttggtacaacatttttgacaacctt 16267844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 7138 - 7174
Alignment:
Q  125 tttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  7138 tttttgacaaccttctttttctctttttttattggtc 7174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 20216134 - 20216106
Alignment:
Q  87 tatgagcaatgatatttgaacaaccattt 115  Q
    |||||||||||||||||||||||||||||    
T  20216134 tatgagcaatgatatttgaacaaccattt 20216106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 41717442 - 41717374
Alignment:
Q  93 caatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||| ||||||||||||  || || |||||||| |||| ||||||||  ||| |||||||    
T  41717442 caatgatatttgatcaaccatttggtataatctatttgacaatcttctttttctctcttttcattggtc 41717374  T

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Target: scaffold0184 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 16480 - 16554
Alignment:
Q  87 tatgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||| |||||||||||||| |||| |||||||||| |||| ||||||||  ||| |||||||    
T  16480 tatgagcaatgatatttcaacaaccatttggtacaacttttttgacaatcttctttttctctcgtttcattggtc 16554  T

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Target: scaffold0078 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 56364 - 56290
Alignment:
Q  87 tatgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||| |||||||||||||| |||| |||||||||| |||| ||||||||  ||| |||||||    
T  56364 tatgagcaatgatatttcaacaaccatttggtacaacttttttgacaatcttctttttctctcgtttcattggtc 56290  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 4842406 - 4842479
Alignment:
Q  88 atgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||| ||||| |||||||| | |||||| ||||||||||||| ||||||||| ||| |||||||    
T  4842406 atgagcaatgatatatgaactaccatttgatacaacctatttgacaaccttcattttctcttttttcattggtc 4842479  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 15283138 - 15283209
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||| |||||||| || |||  | ||||||||||||| ||||||||| |||||||||||    
T  15283138 gagcaatgatatttgaataaccatttcgtacaatttatttgacaaccttccttttctctttttttattggtc 15283209  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 21805675 - 21805733
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    |||||||||||||| |||||||||||||| ||| |||||||||||||||| | ||||||    
T  21805675 gagcaatgatattttaacaaccatttggtacaatctttttgacaaccttcttattctct 21805733  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 40951372 - 40951314
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    |||||||||||| |||||||||||| ||| |||||| ||||||||||||| ||||||||    
T  40951372 gagcaatgatatatgaacaaccattaggtacaacctatttgacaaccttccttttctct 40951314  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 5167633 - 5167702
Alignment:
Q  92 gcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||||||||||||||||  |||||  |||||||||||| ||||||||  ||| |||||||    
T  5167633 gcaatgatatttgaacaaccatttggtataacctacttgacaaccttcattttctctcttttcattggtc 5167702  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 19668078 - 19668147
Alignment:
Q  92 gcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||| | |||||| ||||| ||||||| ||||||||  ||| |||||||    
T  19668078 gcaatgatatttgaacaaccatttgatacaacctatttgataaccttccttttctctcttttcattggtc 19668147  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 19637409 - 19637365
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaa 134  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||    
T  19637409 gagcaatgatatttgaacaaccatttggtacaacctttatgacaa 19637365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 19836002 - 19835958
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaa 134  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||    
T  19836002 gagcaatgatatttgaacaaccatttggtacaacctttatgacaa 19835958  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 305854 - 305902
Alignment:
Q  87 tatgagcaatgatatttgaacaaccatttggtgcaacctttttgacaac 135  Q
    ||||||||||||||||||||||| |||||||| ||| |||| |||||||    
T  305854 tatgagcaatgatatttgaacaatcatttggtacaatctttatgacaac 305902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 30856986 - 30856918
Alignment:
Q  93 caatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||| |||||||||||||||| |||  | ||||||||||||| ||||||||  ||| |||||||    
T  30856986 caatgatatatgaacaaccatttggtacaatttatttgacaaccttctttttctctcttttcattggtc 30856918  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 11126644 - 11126601
Alignment:
Q  91 agcaatgatatttgaacaaccatttggtgcaacctttttgacaa 134  Q
    ||||||||||||||||||| |||||||| |||||||| ||||||    
T  11126644 agcaatgatatttgaacaatcatttggttcaacctttatgacaa 11126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 13553316 - 13553254
Alignment:
Q  99 tatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||||||||| |||||| |||||||| |||  ||||||||  ||| |||||||    
T  13553316 tatttgaacaaccatttggtacaacctatttgacaatctttcttttctctcttttcattggtc 13553254  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 13553347 - 13553310
Alignment:
Q  94 aatgatatttgaacaaccatttggtgcaacctttttga 131  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  13553347 aatgatatttgaacaaccatttggtacaacctatttga 13553310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 32128315 - 32128274
Alignment:
Q  86 atatgagcaatgatatttgaacaaccatttggtgcaaccttt 127  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||    
T  32128315 atatgagcaatgatatttgaacaactatttggtacaatcttt 32128274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 36763408 - 36763480
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggt-gcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||| |  |||  ||| ||||||||||| ||||||||  ||| |||||||    
T  36763408 gagcaatgatatttgaacaaccatttgttaacaatttttatgacaaccttctttttctctcttttcattggtc 36763480  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 43791683 - 43791751
Alignment:
Q  94 aatgatatttgaacaaccatttggtg-caacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    |||||||||||||||||| ||| ||| |||| ||| ||||||||| | ||||||||  |||||||||||    
T  43791683 aatgatatttgaacaaccttttagtgacaacttttgtgacaacctaccttttctctctttttattggtc 43791751  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 8173200 - 8173272
Alignment:
Q  89 tgagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||  ||||||||  ||| |||||||    
T  8173200 tgagcaatgatatttgaacaaccatttggtataacctatttgacaacctttcttttctctcttttcattggtc 8173272  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 25567380 - 25567426
Alignment:
Q  88 atgagcaatgatatttgaacaaccatttggtgcaacctttttgacaa 134  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||    
T  25567380 atgagcaatgatatttgaacaaccatttggtacaacctttatgacaa 25567426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 32730071 - 32730013
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||| ||| ||||||||    
T  32730071 gagcaatgatatatgaacaaccatttggtacaacctatttgacaacattctttttctct 32730013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 21443870 - 21443799
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||| ||||||| ||| || || |||||||||| |||| |||  ||| |||||||    
T  21443870 gagcaatgatatttgaacaactatttggtacaatctattggacaaccttcattttatctcttttcattggtc 21443799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 115
Target Start/End: Complemental strand, 8645496 - 8645467
Alignment:
Q  86 atatgagcaatgatatttgaacaaccattt 115  Q
    ||||||||||||||||||||||||||||||    
T  8645496 atatgagcaatgatatttgaacaaccattt 8645467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 25561831 - 25561875
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaa 134  Q
    ||||||||||||||||||||| ||||||| | |||||| ||||||    
T  25561831 gagcaatgatatttgaacaactatttggtaccacctttatgacaa 25561875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 26101345 - 26101389
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaa 134  Q
    ||||||||||||||||||||| ||||||| | |||||| ||||||    
T  26101345 gagcaatgatatttgaacaactatttggtaccacctttatgacaa 26101389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 440900 - 440842
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctct 148  Q
    ||||||||||||||||||||||||||||| ||| || |||||||| |||  ||||||||    
T  440900 gagcaatgatatttgaacaaccatttggtacaatctatttgacaatctttcttttctct 440842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 337300 - 337229
Alignment:
Q  90 gagcaatgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggtc 161  Q
    ||||||||||||||||||||  ||||||| |||  ||||| ||||  ||| ||||||||| |||||||||||    
T  337300 gagcaatgatatttgaacaattatttggtacaatattttttacaattttctttttctctttttttattggtc 337229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 15084 - 15147
Alignment:
Q  96 tgatatttgaacaaccatttggtgcaacctttttgacaaccttcgttttctcttattttattggt 160  Q
    ||||||||||||||| ||||||| |||| ||| |||||| |||| ||||||||| ||| ||||||    
T  15084 tgatatttgaacaactatttggtacaacttttgtgacaa-cttctttttctcttttttcattggt 15147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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