View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16590_low_23 (Length: 204)
Name: NF16590_low_23
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 33520407 - 33520234
Alignment:
| Q |
11 |
cgaagaatatcctgcaacaaattttgagcagtcatccatgatatattaaccaattcataactccagcccaaatttacataccaaaaaactaccttcaaat |
110 |
Q |
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| T |
33520407 |
cgaagaatatcctgcaacaaattttgagcagtcatccatgatatattaaccaattcataactccagcccaaatttacataccaaaaaactaccttcaaat |
33520308 |
T |
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| Q |
111 |
agtcactcctttctttatctcttaattcatattgaagtgtttgatatcacacaagtgatcaagcaaaaacatat |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33520307 |
agtcactcctttctttatctcttaattcatattgaagtgtttgatatcacacaagtgatcaagcaaaaacatat |
33520234 |
T |
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Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 33495647 - 33495821
Alignment:
| Q |
11 |
cgaagaatatcctgcaacaaattttgagcagtcatccatgatatattaaccaattcataactccag-cccaaatttacataccaaaaaactaccttcaaa |
109 |
Q |
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|||||||||||||||||||||||||| || ||||||| ||||||||||||||||| | |||| |||||||||||||| |||||||| ||||||||| |
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| T |
33495647 |
cgaagaatatcctgcaacaaattttgtatagccatccatcatatattaaccaattcaaacttccatacccaaatttacataacaaaaaaccaccttcaaa |
33495746 |
T |
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| Q |
110 |
tagtcactcctttctttatctcttaattcatattgaagtgtttgatatcacacaagtgatcaagcaaaaacatat |
184 |
Q |
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|||||||||||||||| |||| |||| |||||| ||||||||||||| | |||||||||||||||||||||||| |
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| T |
33495747 |
gagtcactcctttctttgtctcataatgcatattaaagtgtttgatattaaacaagtgatcaagcaaaaacatat |
33495821 |
T |
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