View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16590_low_25 (Length: 204)
Name: NF16590_low_25
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 44974766 - 44974937
Alignment:
| Q |
16 |
aatattggaagaactaaaggtaaaagcagagagatcagatacaagagttcaaggattcatgaaatttgtacactttttagaaggttttggaagatcatat |
115 |
Q |
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| T |
44974766 |
aatattggaagaactaaaggtaaaagcagagagatcagatacaagagttcaaggattcatgaaatttgtacactttttagaagattttggaagatcatat |
44974865 |
T |
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| Q |
116 |
accgaacaaaacaactactgttgacaaacacagcagaagcattacttgttggtcttgttttaggaacaattt |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44974866 |
accgaacaaaacaactactgttgacaaacacagcagaagcattacttgttggtcttgttttaggaacaattt |
44974937 |
T |
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