View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16590_low_4 (Length: 521)
Name: NF16590_low_4
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 16 - 504
Target Start/End: Complemental strand, 4887012 - 4886521
Alignment:
| Q |
16 |
atgataagtctcatttatgataagaaagaatattgtaaaagggttttggaaagagcatgtgatcaagtagagttagctttgctagtatggctagtagaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4887012 |
atgataagtctcatttatgataagaaagaatattgtaaaagggttttggaaagagcatgtgatcaagtagagttggctttgctagtatggctagtagaca |
4886913 |
T |
|
| Q |
116 |
aacacctttgctttagtagtcaaattaaagcacttcactaacctacaatccatccattaggtacatataaagtgtgaaatccatcaaacttcactttcca |
215 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4886912 |
aacatctttgctttagtagtcaaattaaagcacttcactaacctaaaatccatccattaggtacatataaagtgtgaaatccatcaaacttcactttcca |
4886813 |
T |
|
| Q |
216 |
atgaaaaccacaacccacatgatcatgcttgggggaattgaaagatcacaattcacaaacacactctcaaaagaagatctcctctcctcatttcatctca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
4886812 |
atgaaaaccacaacccacatgatcatgcttgggggaattgaaagatcacaattcacaaacactctctcaaaagaagatctcctcttctcatttcatctca |
4886713 |
T |
|
| Q |
316 |
cttcccatccccc-cttctatctaattccatatatatat--tctctctctcattgaccctacatcaccagcatcctcacctaaacttagtgtaaaaatat |
412 |
Q |
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||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4886712 |
cttcccatccccctcttctctctaattccatatatatattctctctctctcattgaccctacatcaccagcatcctcacctaaacttagtgtaaaaatat |
4886613 |
T |
|
| Q |
413 |
ttattattggccgacaagtgtcaactattgattgatacacgcacaccccagtgacaaccctatcaaaagtttcaaagttttttgcttgctaa |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4886612 |
ttattattggccgacaagtgtcaactattgattgatacacgcacaccccagtgacaaccctatcaaaagtttcaaagttttttgcttgctaa |
4886521 |
T |
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