View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16590_low_5 (Length: 474)
Name: NF16590_low_5
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 37457522 - 37457791
Alignment:
| Q |
14 |
agaccaaatgaggtcaagacatttgcacactgatgaaaattacatgaccaaattatgactcaaggttatttatttaacttatttgtttgtgttaatgctt |
113 |
Q |
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| T |
37457522 |
agaccaaatgaggtcaagacatttgcacactgatgaaaattacatgaccaaattatgactcaaggttatttatttaacttatttgtttgtgttaatgctt |
37457621 |
T |
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| Q |
114 |
tacgtcagttccttctactttaaagaaaaggatcagtattccatggctgactgtgagcacaaagaaatggctaggactagtgaagtcggtaccgcttcca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37457622 |
tacgtcagttccttctactttaaagaaaaggatcagtattccatggctgactgtgagcacaaagaaatggctaggactagtgaagtcggtaccgcttcca |
37457721 |
T |
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| Q |
214 |
aatgaggtgcggcaagaagtggtgtagaagataatgatataaacgatgatacttcagtctcttgggagtt |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37457722 |
aatgaggtgcggcaagaagtggtgtagaagataatgatataaacgatgatacttcagtctcttgggagtt |
37457791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 284 - 458
Target Start/End: Original strand, 37457897 - 37458071
Alignment:
| Q |
284 |
tgtatagggtaatatctctctgcatcatatgggtagaacttaaaagaatcaattctactgttttttacacaagtagcttgaaaaatattgtgaaataact |
383 |
Q |
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| T |
37457897 |
tgtatagggtaatatctctctgcatcatatgggtagaacttaaaagaatcaattctactgttttttacacaagtagcttgaaaaatattgtgaaataact |
37457996 |
T |
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| Q |
384 |
ttgatctttagtaaagcaaggatctttctttcctattcaacctccaaaagctattatctaggaaatggtatacat |
458 |
Q |
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| T |
37457997 |
ttgatctttagtaaagcaaggatctttctttcctattcaacctccaaaagctattatctaggaaatggtatacat |
37458071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 18748395 - 18748349
Alignment:
| Q |
345 |
tttttacacaagtagcttgaaaaatattgtgaaataactttgatctt |
391 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18748395 |
ttttgacacaagtagcttgaaaaatattgtgaaataactttgatctt |
18748349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 453
Target Start/End: Complemental strand, 8570859 - 8570787
Alignment:
| Q |
380 |
aactttgatctttagtaaagcaaggatctttctttcctattcaacctccaaaagctattatctaggaaatggta |
453 |
Q |
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| T |
8570859 |
aactttgatctttagtaa-gcaagaatctttctttcccattcaacctccaacagctataaactagcaaatggta |
8570787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 24252247 - 24252293
Alignment:
| Q |
345 |
tttttacacaagtagcttgaaaaatattgtgaaataactttgatctt |
391 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24252247 |
ttttgacacaaatagcttgaaaaatattgtgaaataactttgatctt |
24252293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 23247409 - 23247455
Alignment:
| Q |
345 |
tttttacacaagtagcttgaaaaatattgtgaaataactttgatctt |
391 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23247409 |
ttttgacataagtagcttgaaaaatattgtgaaataactttgatctt |
23247455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 458
Target Start/End: Complemental strand, 29455752 - 29455694
Alignment:
| Q |
400 |
caaggatctttctttcctattcaacctccaaaagctattatctaggaaatggtatacat |
458 |
Q |
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|||| ||||| |||||| ||||||||| |||||||||| | |||| ||||||||||||| |
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| T |
29455752 |
caagtatcttcctttcccattcaaccttcaaaagctataaactagcaaatggtatacat |
29455694 |
T |
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