View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16590_low_6 (Length: 472)

Name: NF16590_low_6
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16590_low_6
NF16590_low_6
[»] chr1 (5 HSPs)
chr1 (15-455)||(29443388-29443828)
chr1 (18-455)||(29453371-29453799)
chr1 (166-455)||(29423051-29423340)
chr1 (32-455)||(29467847-29468276)
chr1 (15-138)||(29422938-29423052)
[»] chr2 (46 HSPs)
chr2 (15-150)||(12012927-12013054)
chr2 (219-455)||(12018955-12019191)
chr2 (69-455)||(9284257-9284665)
chr2 (266-455)||(9320868-9321057)
chr2 (69-209)||(10371511-10371648)
chr2 (69-436)||(9315691-9316075)
chr2 (266-455)||(9328485-9328674)
chr2 (15-150)||(11987865-11987992)
chr2 (220-455)||(10352949-10353184)
chr2 (69-193)||(9294990-9295115)
chr2 (95-209)||(10347462-10347575)
chr2 (69-163)||(9328262-9328355)
chr2 (213-455)||(11987554-11987796)
chr2 (15-150)||(12019266-12019391)
chr2 (388-455)||(10347793-10347860)
chr2 (213-455)||(12012613-12012858)
chr2 (265-323)||(9061358-9061416)
chr2 (15-163)||(9320596-9320736)
chr2 (216-395)||(9364464-9364643)
chr2 (228-383)||(10335704-10335859)
chr2 (213-323)||(9291755-9291865)
chr2 (389-454)||(9061209-9061274)
chr2 (265-455)||(7115709-7115902)
chr2 (15-194)||(9364242-9364409)
chr2 (265-324)||(16268953-16269012)
chr2 (15-69)||(9291563-9291617)
chr2 (338-455)||(8573572-8573689)
chr2 (338-455)||(9065660-9065777)
chr2 (226-323)||(10371683-10371780)
chr2 (113-150)||(12006496-12006533)
chr2 (120-211)||(9065937-9066035)
chr2 (69-163)||(9061545-9061636)
chr2 (122-209)||(10335584-10335670)
chr2 (265-323)||(8573725-8573783)
chr2 (15-69)||(12006544-12006598)
chr2 (402-455)||(10335866-10335919)
chr2 (266-323)||(10347650-10347707)
chr2 (265-324)||(8579703-8579762)
chr2 (15-125)||(8573931-8574035)
chr2 (265-347)||(9065789-9065871)
chr2 (338-455)||(9291901-9292012)
chr2 (15-69)||(10352735-10352789)
chr2 (389-455)||(10371867-10371933)
chr2 (213-455)||(12006185-12006427)
chr2 (400-454)||(16269109-16269163)
chr2 (15-64)||(9066089-9066138)
[»] chr8 (2 HSPs)
chr8 (213-455)||(41966772-41967017)
chr8 (69-196)||(41967067-41967192)
[»] chr3 (2 HSPs)
chr3 (15-132)||(37462095-37462205)
chr3 (338-455)||(37462447-37462564)
[»] scaffold0667 (1 HSPs)
scaffold0667 (69-161)||(4117-4208)
[»] chr7 (5 HSPs)
chr7 (338-455)||(45237908-45238025)
chr7 (338-455)||(45243657-45243774)
chr7 (400-455)||(45230452-45230507)
chr7 (265-323)||(45230293-45230351)
chr7 (265-323)||(45243555-45243613)
[»] chr4 (1 HSPs)
chr4 (401-455)||(26574882-26574936)


Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 15 - 455
Target Start/End: Complemental strand, 29443828 - 29443388
Alignment:
Q  15 caaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatca 114  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443828 caaaggtagagacttcaaaataattagagaatccttgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatca 29443729  T
Q  115 tatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttctcttgcttgtttgattctccttcctggg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443728 tatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttctcttgcttgtttgattctccttcctggg 29443629  T
Q  215 gaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443628 gaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaa 29443529  T
Q  315 aacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443528 aacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcag 29443429  T
Q  415 ccaaagtaaaaagtttacaccagctatctctacatccatat 455  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29443428 ccaaagtaaaaagtttacaccagctatctctacatccatat 29443388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 29453799 - 29453371
Alignment:
Q  18 aggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatcatat 117  Q
    |||||||||||||||| ||||||||||||  |||| |||| |||||||||||       ||||   ||||||||||  |||||||||  |||||||||||    
T  29453799 aggtagagacttcaaagtaattagagaatccttgttctataataagaattca-------attta--cttttaacataaagtttaactgcatatatcatat 29453709  T
Q  118 gatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttctcttgcttgtttgattctccttcctggggaa 217  Q
    ||||| || |||||| ||| ||||||||||||| || |||||||||| |||| |||||| ||||||||||||||||||| | |||||| |||||||||||    
T  29453708 gatggatctattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgcttgtataattctctttcctggggaa 29453609  T
Q  218 agaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaaac 317  Q
     |||||| | |||||||||||||||||||| || || ||||| |   ||||||||||||||||| |||||||   |||||||||||||||||||||||||    
T  29453608 ggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaaac 29453509  T
Q  318 agcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagcca 417  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||  || ||||| | ||||||||||| ||||||| ||||| ||||    
T  29453508 agcttctcacaatctacttccaacagaaccatacttccatcgctcgaataagctaaaggccacaaagttttcaaaggtaaaatgaaacatgattccgcca 29453409  T
Q  418 aagtaaaaagtttacaccagctatctctacatccatat 455  Q
    |||||||||||| |||||||||||||||||||||||||    
T  29453408 aagtaaaaagttcacaccagctatctctacatccatat 29453371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 166 - 455
Target Start/End: Original strand, 29423051 - 29423340
Alignment:
Q  166 taatcaataagaagtaccttctcttgcttgtttgattctccttcctggggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccct 265  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| ||||| ||||||  ||||||||||||||||||||| ||||| ||||| |   |    
T  29423051 taatcaataagaagtaccttctcttgcttgtgcgattctccttcctagggaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaatt 29423150  T
Q  266 aggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaa 365  Q
    ||||||||||| |||| |||||||   |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||    
T  29423151 aggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttctcaggatctacttgcaacagaaccatacctccatcgctcgaa 29423250  T
Q  366 taacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatat 455  Q
    ||| |||||| |||||||||| ||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29423251 taagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatat 29423340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 32 - 455
Target Start/End: Complemental strand, 29468276 - 29467847
Alignment:
Q  32 aaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatcatat-----gatgggtcc 126  Q
    ||||||||||||||| |||||||||| |||||||||||       ||||||||||||||||  ||||||||||  |||||||||||     ||| |||||    
T  29468276 aaataattagagaatcattgtcctataataagaattca-------atttgaccttttaaca--gagtttaactgcatatatcatatcatatgataggtcc 29468186  T
Q  127 attgaat-tgatattaacttatacaaag---------aaaaaactcaggtaatcaataagaagtaccttctcttgcttgtttgattctccttcctgggga 216  Q
    ||| | | ||||||||||||||||| |          |||||||||||  ||||||||||||||||||||||||||||||  ||||||| ||||| ||||    
T  29468185 attaactgtgatattaacttatacataacaaaaactcaaaaaactcagacaatcaataagaagtaccttctcttgcttgtgcgattctcgttcctaggga 29468086  T
Q  217 aagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaaa 316  Q
    | |||||| |||||||||||||||||||||| || || | || ||   |||||||||||||||||||| |||||  ||||||||||||||||||||||||    
T  29468085 aggaaggtggtacaagacttccaacacaaatcatagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcataccaaaa 29467986  T
Q  317 cagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagcc 416  Q
    || ||||||| | |||||||  |||||||||||||||| |||||||||||||||||||  |||||||| |  |||  ||||| |||||||||||  | ||    
T  29467985 caacttctcatggtctacttcaaacagaaccatacttccatcgctcgaataacctaaaggcctcaaagattccaactgtaaagtgaaacacgatctaacc 29467886  T
Q  417 aaagtaaaaagtttacaccagctatctctacatccatat 455  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  29467885 aaagtaaaaagtttacgccaactatctctacatccatat 29467847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 29422938 - 29423052
Alignment:
Q  15 caaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatca 114  Q
    |||||||||||||||||||||||||||||||| |||||| ||| |||||||||||       ||||||||||||||||  ||||||||||||||||||||    
T  29422938 caaaggtagagacttcaaaataattagagaatcattgtcatataataagaattca-------atttgaccttttaaca--gagtttaactagatatatca 29423028  T
Q  115 tatgatgggtccattgaattgata 138  Q
    |||||| |||||||||||||||||    
T  29423029 tatgatcggtccattgaattgata 29423052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 12013054 - 12012927
Alignment:
Q  15 caaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatca 114  Q
    ||||||||||||||||||| ||||||||||||  ||||||||| |||||||||||       ||||||||||| |||||||||| |||||| ||||||||    
T  12013054 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattca-------atttgaccttt-aacatggagtctaactacatatatca 12012963  T
Q  115 tatgatgggtccattgaattgatattaacttataca 150  Q
    ||||||||||||||||||||||||||||||||||||    
T  12012962 tatgatgggtccattgaattgatattaacttataca 12012927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 219 - 455
Target Start/End: Complemental strand, 12019191 - 12018955
Alignment:
Q  219 gaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaaaca 318  Q
    |||||| |||||||||||||||||||||| ||||| | ||| |   |||||||||||||||||||||||||    | |||||| | ||||||||||| ||    
T  12019191 gaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaatcataccaaacca 12019092  T
Q  319 gcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaa 418  Q
    || | | | ||| ||| | ||||| |||| |  ||| ||| |||||||||||||||   ||||||  ||| |||||||||  ||||||||||||   |||    
T  12019091 gcatattatgatttacatccaacaaaaccttttttccatcactcgaataacctaaagggctcaaaaatctaaaaggtaaaacgaaacacgattccatcaa 12018992  T
Q  419 agtaaaaagtttacaccagctatctctacatccatat 455  Q
    |||||||||||||||||| ||||||||||||||||||    
T  12018991 agtaaaaagtttacaccaactatctctacatccatat 12018955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 69 - 455
Target Start/End: Complemental strand, 9284665 - 9284257
Alignment:
Q  69 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaag-aaaaaactcaggta 167  Q
    ||||||||||||||||||| || ||  |||||||||| ||| || |||||||||||||||| || | | |||||||||||||||| ||||||||||| ||    
T  9284665 agaattcaatttgaccttt-aatataaagtttaactacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaaactcagata 9284567  T
Q  168 atcaataa-gaagtaccttctcttgct--tgttt----gattctccttcctg---------------gggaaagaaggttgtacaagacttccaacacaa 245  Q
    |||||||| ||||||||||||||||||  || ||    ||||||||||| |                ||||| |||||| | ||||||||| ||||||||    
T  9284566 atcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtggcacaagactttcaacacaa 9284467  T
Q  246 atgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaa 345  Q
    || || || | |||||   |||||||||||||||||||| ||||    |||||||| | ||||||||||| |||||||| || ||||| ||  || ||||    
T  9284466 atcatagcttcatccaaattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttcttacaatctatttctaatagaa 9284367  T
Q  346 ccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagctatctct 445  Q
    || |||| | ||| || ||||||||||||  |||||||| | ||||| ||||| |||| |  |||| | |||||||||||| ||||||||| ||||||||    
T  9284366 ccttactaccatcactagaataacctaaaggcctcaaagatttcaaacgtaaagtgaaccgtgatttaaccaaagtaaaaattttacaccaactatctct 9284267  T
Q  446 acatccatat 455  Q
    | | ||||||    
T  9284266 agaaccatat 9284257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 266 - 455
Target Start/End: Original strand, 9320868 - 9321057
Alignment:
Q  266 aggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaa 365  Q
    ||||||||||||||||||||||||   | ||||||| | ||||||||||||||||||||||  ||||||   ||||| |||| |  ||| ||| ||||||    
T  9320868 aggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttctcagcatctaccctcaacaaaaccttttttccatcactcgaa 9320967  T
Q  366 taacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatat 455  Q
    |||||||||  |||||||| | |||||||||||  | ||||||||| | ||| |||||||||||||||||| ||||||||| | ||||||    
T  9320968 taacctaaaggcctcaaagatttcaaaggtaaatcgtaacacgatttaaccatagtaaaaagtttacaccaactatctctagaaccatat 9321057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 10371511 - 10371648
Alignment:
Q  69 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaa 168  Q
    ||||||||||||||||||| ||||  ||||||||||  |||||| ||||||||| ||||||||| ||||||||||||||||| |  |||||||||| |||    
T  10371511 agaattcaatttgaccttt-aacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttatacacaacaaaaactcagttaa 10371609  T
Q  169 tcaataagaagtaccttctcttgcttgtttgattctccttc 209  Q
      || || |||||||||||||||||||| ||||||||||||    
T  10371610 --aacaataagtaccttctcttgcttgtatgattctccttc 10371648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 436
Target Start/End: Original strand, 9315691 - 9316075
Alignment:
Q  69 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaa 168  Q
    ||||||||||||||||||| | ||| |||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||| || |||||||||  |||    
T  9315691 agaattcaatttgaccttt-agcatagagtttaactacttatatcatatgatgggtccattgaactgacattaacttatacatagcaaaaactcaaataa 9315789  T
Q  169 tcaataagaagtaccttc------tcttgcttgtttgattctccttcct---------------ggggaaagaaggttgtacaagacttccaacacaaat 247  Q
    |  ||   ||||||||||      |||||||||| |||||||||||| |                ||||| |||||| ||||||||||| ||||||||||    
T  9315790 tatat---aagtaccttctcttgttcttgcttgtatgattctccttcttcctacaataatcaacagggaaggaaggtggtacaagactttcaacacaaat 9315886  T
Q  248 gatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaacc 347  Q
     || || | |||||   ||| |||||||||||||||| ||||   ||||||| | |  ||| ||||||||||||||| || ||||| || ||| ||||||    
T  9315887 catagcttcatccaaattagaaattccttcaacataaataacttgttcactcatcaagtcacaccaaaacagcttcttacaatctatttccaatagaacc 9315986  T
Q  348 atacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacacca 436  Q
     ||||||  || || ||||||||||||  | |||||    |||||| |||| ||||||| || | | ||||||||||||||||||||||    
T  9315987 ttacttccgtcactagaataacctaaaggcttcaaaaaattcaaagataaagtgaaacatgaattaaccaaagtaaaaagtttacacca 9316075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 455
Target Start/End: Original strand, 9328485 - 9328674
Alignment:
Q  266 aggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaa 365  Q
    ||||||||||||||||||||||||   | ||||| | | ||||||| ||||||||||||||  ||| ||   ||||| |||| |  ||| ||| ||| ||    
T  9328485 aggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttctcaaaatccaccctcaacaaaaccttttttccatcactcaaa 9328584  T
Q  366 taacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatat 455  Q
    |||||||||  |||||||| | |||||||||||  ||||||||||| | ||| |||||||||||||||||| ||||||||| ||||||||    
T  9328585 taacctaaaggcctcaaagatttcaaaggtaaatggaaacacgatttaaccatagtaaaaagtttacaccaactatctctatatccatat 9328674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 11987992 - 11987865
Alignment:
Q  15 caaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatca 114  Q
    ||||||||||||||||||| |||||||| |||  ||||||||| ||| |||||||       ||||||||||| |||||  |||||||||| ||||||||    
T  11987992 caaaggtagagacttcaaagtaattagaaaatccttgtcctataataggaattca-------atttgaccttt-aacataaagtttaactacatatatca 11987901  T
Q  115 tatgatgggtccattgaattgatattaacttataca 150  Q
     |||||||||||||||||||||||||||||||||||    
T  11987900 catgatgggtccattgaattgatattaacttataca 11987865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 455
Target Start/End: Original strand, 10352949 - 10353184
Alignment:
Q  220 aaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaaacag 319  Q
    ||||| |||||||||||||||||||||| || |  | |||||   || ||||| ||| ||||||||||||   || |||||  | |||||||||||| ||    
T  10352949 aaggtggtacaagacttccaacacaaatcatagtgtcatccaaattaagaatttcttgaacataactaacttgtttactctccaaatcataccaaaatag 10353048  T
Q  320 cttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaa 419  Q
     ||||||  ||||||   ||||| |||| |  ||||||| |||||||||||||||| |||||||| |  ||||||||||  |||| | |||| | ||| |    
T  10353049 attctcaacatctaccctcaacaaaaccttttttctatcactcgaataacctaaaagcctcaaagattgcaaaggtaaatcgaaagaagatttaaccaca 10353148  T
Q  420 gtaaaaagtttacaccagctatctctacatccatat 455  Q
    ||||||||||||||||| || |||||||||||||||    
T  10353149 gtaaaaagtttacaccaactctctctacatccatat 10353184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 9295115 - 9294990
Alignment:
Q  69 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaag-aaaaaactcaggta 167  Q
    ||||||||||||||||||| | ||| ||||||||| | ||| || |||||||||||||||| || | | |||||||||||||||| ||||||||||| ||    
T  9295115 agaattcaatttgaccttt-agcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaaactcagata 9295017  T
Q  168 atcaat-aagaagtaccttctcttgct 193  Q
    |||||| ||||||||||||||||||||    
T  9295016 atcaataaagaagtaccttctcttgct 9294990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 10347462 - 10347575
Alignment:
Q  95 gagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttctcttgctt 194  Q
    ||||||||||  |||||| |||||||  |||||||||| |||||| |||||||||| |  |||||||||| ||| |||||||||||||||||||||||||    
T  10347462 gagtttaactgcatatatgatatgataagtccattgaactgatat-aacttatacacaacaaaaactcagttaaacaataagaagtaccttctcttgctt 10347560  T
Q  195 gtttgattctccttc 209  Q
    |  ||||||||||||    
T  10347561 ggatgattctccttc 10347575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 9328262 - 9328355
Alignment:
Q  69 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactca 163  Q
    ||||||||||||||||||| | ||| ||||||||||  ||||||||||||| |||||||||||||||| || |||||||||| || |||||||||    
T  9328262 agaattcaatttgaccttt-agcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactca 9328355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 213 - 455
Target Start/End: Complemental strand, 11987796 - 11987554
Alignment:
Q  213 gggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcatacc 312  Q
    ||||| || ||| |||||||||||||||||||||| || || | ||| |   |||||||||| |||||||||||||    ||||||||| | ||||||||    
T  11987796 gggaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaatttaggaattccgtcaacataactaaattgttcactcttcaaatcatacc 11987697  T
Q  313 aaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattc 412  Q
    ||| ||||||||   |||  |  | ||||| |||| |  | | ||| ||||||||||| |||   ||||||| | |||||||||||  ||||||||||||    
T  11987696 aaaccagcttcttgtgattaagatccaacaaaacctttttaccatcactcgaataacccaaagggctcaaagatttcaaaggtaaaacgaaacacgattc 11987597  T
Q  413 agccaaagtaaaaagtttacaccagctatctctacatccatat 455  Q
       ||| || |||||||||||||| ||||||||||||||||||    
T  11987596 catcaatgtgaaaagtttacaccaactatctctacatccatat 11987554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 12019391 - 12019266
Alignment:
Q  15 caaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatca 114  Q
    ||||||||||||||||||| ||||||||||||  ||||||||| ||||||||||  ||| ||          ||||||| ||||||||||| ||||||||    
T  12019391 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcc-aataca----------ttaacatagagtttaactacatatatca 12019303  T
Q  115 tatgatgggtccattgaatt-gatattaacttataca 150  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  12019302 tatgatgggtccattgaattggatgttaacttataca 12019266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 10347793 - 10347860
Alignment:
Q  388 tcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatat 455  Q
    |||||||||||  ||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||    
T  10347793 tcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacaccaactatctctacatccatat 10347860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 455
Target Start/End: Complemental strand, 12012858 - 12012613
Alignment:
Q  213 gggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcatacc 312  Q
    ||||| || ||| |||||||||||||||||||||| || || | ||| |   |||||||||||||||||||||||||   || |||||| | ||||||||    
T  12012858 gggaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaaattaggaattccttcaacataactaac---ttgactcttcaaatcatacc 12012762  T
Q  313 aaaacagcttctcacgatctacttgcaacagaa------ccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaaca 406  Q
    ||| |||||||| | ||| ||| | ||||| ||      ||||  | | |||  |||||||||| |||   ||||||  | |||||||||||  ||||||    
T  12012761 aaaccagcttcttatgatttacctccaacaaaaacaaaaccattttaccatcattcgaataacccaaaggtctcaaaaatatcaaaggtaaaacgaaaca 12012662  T
Q  407 cgattcagccaaagtaaaaagtttacaccagctatctctacatccatat 455  Q
    ||||||  |||||||||||||||||||||| |||||| |||| ||||||    
T  12012661 cgattccaccaaagtaaaaagtttacaccaactatctttacaaccatat 12012613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 323
Target Start/End: Complemental strand, 9061416 - 9061358
Alignment:
Q  265 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 323  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  9061416 taggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttc 9061358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 9320596 - 9320736
Alignment:
Q  15 caaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatca 114  Q
    ||||||||||||||||||| ||||||||| ||  |||||| || |||| ||||||       ||||||||| | | ||| ||||||||||  ||||||||    
T  9320596 caaaggtagagacttcaaagtaattagagtatccttgtccgataataaaaattca-------atttgacctat-agcatagagtttaacttaatatatca 9320687  T
Q  115 tatgatgggtccattgaattgatattaacttatacaaagaaaaaactca 163  Q
    |||||||||||||||||||||| || |||| ||||| || |||||||||    
T  9320688 tatgatgggtccattgaattgacatcaactaatacatagcaaaaactca 9320736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 216 - 395
Target Start/End: Original strand, 9364464 - 9364643
Alignment:
Q  216 aaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaa 315  Q
    ||||||||| |||||||||| ||||||||||| || || | || ||   |||||||||||  ||||  | ||||   ||||||||||||||| |||||||    
T  9364464 aaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaa 9364563  T
Q  316 acagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggt 395  Q
    ||||||||| |||||||| || ||| | |||| |  ||| ||| |||||||||||||||  |||||| | | ||||||||    
T  9364564 acagcttcttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaaggt 9364643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 228 - 383
Target Start/End: Original strand, 10335704 - 10335859
Alignment:
Q  228 acaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcac 327  Q
    |||||||||||||||||||| || |  | |||||   ||||||||||||||||||||||||    ||||||||| | |||||||||||||| ||||| ||    
T  10335704 acaagacttccaacacaaatcatagtgtcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacaacttcttac 10335803  T
Q  328 gatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaa 383  Q
     ||| | || ||| |||||| |||||| ||| ||  |||||||||||  |||||||    
T  10335804 aatcgatttccaatagaaccttacttccatcactacaataacctaaaggcctcaaa 10335859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 323
Target Start/End: Original strand, 9291755 - 9291865
Alignment:
Q  213 gggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcatacc 312  Q
    ||||| |||||| ||| ||||||| |||||||||| || || | |||||   ||||||||||||||||||||||||    ||||||||| | ||||||||    
T  9291755 gggaaggaaggtggtagaagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcatacc 9291854  T
Q  313 aaaacagcttc 323  Q
    |||||||||||    
T  9291855 aaaacagcttc 9291865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 454
Target Start/End: Complemental strand, 9061274 - 9061209
Alignment:
Q  389 caaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccata 454  Q
    ||||||| || |||||||||||| | |||||||||||||||||||||| ||||||||| |||||||    
T  9061274 caaaggtgaattgaaacacgatttaaccaaagtaaaaagtttacaccaactatctctagatccata 9061209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 455
Target Start/End: Complemental strand, 7115902 - 7115709
Alignment:
Q  265 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcga 364  Q
    ||||||||||||||||| |||||||   ||| ||||| | ||||||||||| |||||||  || ||||| || ||| |||||| | |||| ||| || ||    
T  7115902 taggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttcctacaatctatttccaatagaaccttgcttccatcactaga 7115803  T
Q  365 ataacctaaaatcct---caaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatat 455  Q
    ||||||||||  |||   | | |   |||||| ||||  ||||||||| | | |||| |||||||||||||||||||| |||||| ||||||||    
T  7115802 ataacctaaaggcctgaaccatgtaatcaaagataaatcgaaacacgaattaaccaatgtaaaaagtttacaccagctgtctctagatccatat 7115709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 9364242 - 9364409
Alignment:
Q  15 caaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatca 114  Q
    |||||||| |||||||||| |||||||||| |  ||||||||| ||||||||||        ||||||||||| || || |||||||| || ||||||||    
T  9364242 caaaggtatagacttcaaagtaattagagactccttgtcctataataagaattcc-------atttgaccttt-aatatagagtttaagtacatatatca 9364333  T
Q  115 tatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttctcttgctt 194  Q
    |||||||||| |||||||  |||| || |||||||| || ||| ||||||   || || || ||||||||||||||||||    
T  9364334 tatgatgggttcattgaacggata-tagcttatacacagcaaagactcag---ataaacaacaagtaccttctcttgctt 9364409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 16268953 - 16269012
Alignment:
Q  265 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttct 324  Q
    ||||||||||||||||||||||||| | ||||||||| | |||||||||||||| |||||    
T  16268953 taggaattccttcaacataactaactcgttcactcttcaaatcataccaaaacaacttct 16269012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 9291563 - 9291617
Alignment:
Q  15 caaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 69  Q
    ||||||||||||||||||| ||||||||||||  ||||||||| |||||||||||    
T  9291563 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattca 9291617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 455
Target Start/End: Complemental strand, 8573689 - 8573572
Alignment:
Q  338 caacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccag 437  Q
    |||||||||| |||||| ||| || ||||||||||||  |||| ||| | | ||| ||  | |||||||||||| | | ||||||||||||||||||||     
T  8573689 caacagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaagtttacaccaa 8573590  T
Q  438 ctatctctacatccatat 455  Q
    ||||||||| | ||||||    
T  8573589 ctatctctagaaccatat 8573572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 455
Target Start/End: Complemental strand, 9065777 - 9065660
Alignment:
Q  338 caacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccag 437  Q
    |||||||||| |||||| ||| |  |||||||||| |  |||| ||||| ||||| || ||  |||||| ||||   ||||||||||||||||||||||     
T  9065777 caacagaaccttacttccatcaccggaataacctagaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaa 9065678  T
Q  438 ctatctctacatccatat 455  Q
    ||||||||| ||||||||    
T  9065677 ctatctctagatccatat 9065660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 10371683 - 10371780
Alignment:
Q  226 gtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 323  Q
    |||||||||| ||||||||||  || |||| |||||   ||| | |||||||||||||||||||   ||||||||| | |||||||||||||||||||    
T  10371683 gtacaagactaccaacacaaaccatagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 10371780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 12006533 - 12006496
Alignment:
Q  113 catatgatgggtccattgaattgatattaacttataca 150  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12006533 catatgatgggtccattgaattgatattaacttataca 12006496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 9066035 - 9065937
Alignment:
Q  120 tgggtccattgaattgatattaacttatacaaagaaaaaactca-------ggtaatcaataagaagtaccttctcttgcttgtttgattctccttcct 211  Q
    ||||||||||||| |||||||||||| ||||||| || ||||||       |  ||| ||||||||||||||||||||| ||||| |||||||||||||    
T  9066035 tgggtccattgaactgatattaacttgtacaaagcaagaactcaaaacttagaaaataaataagaagtaccttctcttggttgttcgattctccttcct 9065937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 9061636 - 9061545
Alignment:
Q  69 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactca 163  Q
    |||||||||||| |||||| | ||| ||||||||||| |||||| |||||||||  |||||||| ||| || |||||||||| || |||||||||    
T  9061636 agaattcaatttaaccttt-agcatagagtttaactacatatattatatgatgg--ccattgaactgacatcaacttatacatagcaaaaactca 9061545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 10335584 - 10335670
Alignment:
Q  122 ggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttctcttgcttgtttgattctccttc 209  Q
    ||||||||||| |||||| |||||||||| |  ||||||||||  || ||||||||||||||||| |||||||||  |||||| ||||    
T  10335584 ggtccattgaactgatat-aacttatacacaacaaaaactcagtcaaacaataagaagtaccttcccttgcttgtacgattctgcttc 10335670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 323
Target Start/End: Complemental strand, 8573783 - 8573725
Alignment:
Q  265 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 323  Q
    |||||||||||||||||||||| ||   ||||||||| | |||||||||||||||||||    
T  8573783 taggaattccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttc 8573725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 12006598 - 12006544
Alignment:
Q  15 caaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 69  Q
    ||||||||||||||||||| ||||||||||||  ||||||||  |||||||||||    
T  12006598 caaaggtagagacttcaaagtaattagagaatccttgtcctaaaataagaattca 12006544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 10335866 - 10335919
Alignment:
Q  402 aaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatat 455  Q
    |||||||||| | ||||||||||| |||||||||| ||||||||||| ||||||    
T  10335866 aaacacgatttaaccaaagtaaaatgtttacaccaactatctctacagccatat 10335919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 10347650 - 10347707
Alignment:
Q  266 aggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 323  Q
    |||||||||||||||||||||||    ||||||||| | |||||||||||||||||||    
T  10347650 aggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttc 10347707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 8579762 - 8579703
Alignment:
Q  265 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttct 324  Q
    |||||||||||| |||| || ||||   |||||| |||||||||||||||||||||||||    
T  8579762 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 8579703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 8574035 - 8573931
Alignment:
Q  15 caaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatca 114  Q
    |||||||| | |||||||| ||||||||||||  ||||||||||  |     | |||||| |||||||||||| | ||| ||||||||| | ||||||||    
T  8574035 caaaggtataaacttcaaagtaattagagaatccttgtcctatgtga-----taagaatttaatttgaccttt-agcatagagtttaaccacatatatca 8573942  T
Q  115 tatgatgggtc 125  Q
    |||||||||||    
T  8573941 tatgatgggtc 8573931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 9065871 - 9065789
Alignment:
Q  265 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaacc 347  Q
    |||||| ||||||||||||| ||||   ||||||||| | |||||||||||| ||||||| | ||||||| | ||||| ||||    
T  9065871 taggaactccttcaacataaataacttgttcactcttcaaatcataccaaaagagcttctgatgatctacctccaacaaaacc 9065789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 455
Target Start/End: Original strand, 9291901 - 9292012
Alignment:
Q  338 caacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccag 437  Q
    |||||||||| |||||| ||| || ||||||| ||||  |||||||| | ||||||      |||| | ||||| | ||||||||||||||||||||||     
T  9291901 caacagaaccttacttccatccctagaataacataaaggcctcaaagatttcaaag------tgaaccgcgatttaaccaaagtaaaaagtttacaccaa 9291994  T
Q  438 ctatctctacatccatat 455  Q
    ||||||||| | ||||||    
T  9291995 ctatctctagaaccatat 9292012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 10352735 - 10352789
Alignment:
Q  15 caaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 69  Q
    |||||||| |||| ||||| ||||||||||||  || ||||||||||||||||||    
T  10352735 caaaggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattca 10352789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 455
Target Start/End: Original strand, 10371867 - 10371933
Alignment:
Q  389 caaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatat 455  Q
    |||||||||||  ||||  |||| | |||||||||||||||||||||| ||||||||| | ||||||    
T  10371867 caaaggtaaacccaaacttgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatat 10371933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 455
Target Start/End: Complemental strand, 12006427 - 12006185
Alignment:
Q  213 gggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcatacc 312  Q
    ||||| |||||  |||||||||||||||||||||| || || | ||| |   | |||||||| ||||  ||| ||||   ||||||||| | ||||||||    
T  12006427 gggaaggaaggcagtacaagacttccaacacaaatcatcgcttcatcgaaatttggaattccctcaatgtaattaacttcttcactcttcaaatcatacc 12006328  T
Q  313 aaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattc 412  Q
    ||| |||||||| | ||| ||| |  |||| ||   |  ||| ||| || ||||||||||||    |||||| | ||| |||||||  |||||||||| |    
T  12006327 aaaccagcttcttatgatttacctcaaacaaaagtttttttccatcacttgaataacctaaagggatcaaagatatcacaggtaaaacgaaacacgatcc 12006228  T
Q  413 agccaaagtaaaaagtttacaccagctatctctacatccatat 455  Q
       ||||||||||||||||||||| |||||| |||| ||||||    
T  12006227 catcaaagtaaaaagtttacaccaactatctttacaaccatat 12006185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 454
Target Start/End: Original strand, 16269109 - 16269163
Alignment:
Q  400 tgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccata 454  Q
    |||||||||||| | |||| ||||||||||| ||||| ||||||||| |||||||    
T  16269109 tgaaacacgatttaaccaaggtaaaaagtttgcaccaactatctctatatccata 16269163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 9066138 - 9066089
Alignment:
Q  15 caaaggtagagacttcaaaataattagagaataattgtcctatgataaga 64  Q
    |||||||||| |||||||| ||||||||||||  || |||||||||||||    
T  9066138 caaaggtagaaacttcaaagtaattagagaatctttatcctatgataaga 9066089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 213 - 455
Target Start/End: Complemental strand, 41967017 - 41966772
Alignment:
Q  213 gggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcatacc 312  Q
    ||||| |||||| |||||||||||||||||||||  ||||| | ||| |   |||||||||||||||||||| |||    ||||||||| | ||||||||    
T  41967017 gggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcatacc 41966918  T
Q  313 aaaacagcttc---tcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacga 409  Q
    ||||||| |||   |||  |  | |||||||||||||| | |||| |||||| ||| ||||||||| || ||| | | |||||| | || ||||||| ||    
T  41966917 aaaacagtttcaaatcattaattccttgcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaaga 41966818  T
Q  410 ttcagccaaagtaaaaagtttacaccagctatctctacatccatat 455  Q
    || | |||||||||||||||||||||||||||||||| ||| ||||    
T  41966817 tttaaccaaagtaaaaagtttacaccagctatctctagatcgatat 41966772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 196
Target Start/End: Complemental strand, 41967192 - 41967067
Alignment:
Q  69 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaa 168  Q
    |||||||||||| |||||| ||||| |||||||| || || |||  |||||||||||||||| | | || | ||| ||||||||| |||| || || |||    
T  41967192 agaattcaatttaaccttt-aacatagagtttaagtacatgtattgtatgatgggtccattgcactaatct-aacatatacaaagcaaaagctaagataa 41967095  T
Q  169 tcaataagaagtaccttctcttgcttgt 196  Q
    | || |||||||||||||||||||||||    
T  41967094 tgaacaagaagtaccttctcttgcttgt 41967067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 37462095 - 37462205
Alignment:
Q  15 caaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatca 114  Q
    ||||||||||||||||||| ||||||||||||  ||||||||| | |||||       ||||||||||||||||| ||| ||  ||||||| ||||||||    
T  37462095 caaaggtagagacttcaaagtaattagagaatccttgtcctataacaagaa-------ttcaatttgaccttttagcatagaacttaactacatatatca 37462187  T
Q  115 tatgatgggtccattgaa 132  Q
    ||||||||||||| ||||    
T  37462188 tatgatgggtccaatgaa 37462205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 455
Target Start/End: Original strand, 37462447 - 37462564
Alignment:
Q  338 caacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccag 437  Q
    ||||| |||| |||||| ||| || ||||||| ||||  |||||||| | |||||||| || |||||||||||| | ||| |||| |||||||||||||     
T  37462447 caacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttacaccaa 37462546  T
Q  438 ctatctctacatccatat 455  Q
    ||||||||| ||||||||    
T  37462547 ctatctctagatccatat 37462564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 4117 - 4208
Alignment:
Q  69 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaact 161  Q
    ||||||||||||||  ||||| ||  ||||||||||| ||| ||||||||||||||||||||||  |||||||||||||||| || |||||||    
T  4117 agaattcaatttgag-ttttagcacagagtttaactaaataaatcatatgatgggtccattgaacagatattaacttatacacagcaaaaact 4208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 455
Target Start/End: Original strand, 45237908 - 45238025
Alignment:
Q  338 caacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccag 437  Q
    |||||||||  |||||| |||||| ||||||| ||||  ||||||   | ||| | | ||| |||||||||||||| | ||||||||||||||||||||     
T  45237908 caacagaactttacttcgatcgcttgaataacataaaggcctcaacaatttcagatgaaaattgaaacacgattcaactaaagtaaaaagtttacaccaa 45238007  T
Q  438 ctatctctacatccatat 455  Q
    ||||||||| ||||||||    
T  45238008 ctatctctagatccatat 45238025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 455
Target Start/End: Original strand, 45243657 - 45243774
Alignment:
Q  338 caacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccag 437  Q
    |||||||||  |||||| ||| |||||||||| ||||  |||||||| |  |||| | ||| |||||||||||| | ||||||||||||||||||||||     
T  45243657 caacagaactttacttcgatcactcgaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaa 45243756  T
Q  438 ctatctctacatccatat 455  Q
     |||||||| | ||||||    
T  45243757 atatctctagaaccatat 45243774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 455
Target Start/End: Original strand, 45230452 - 45230507
Alignment:
Q  400 tgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatat 455  Q
    |||| ||||||| | |||||||||||||||||||||| ||||||||| | ||||||    
T  45230452 tgaaccacgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatat 45230507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 45230293 - 45230351
Alignment:
Q  265 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 323  Q
    |||||||||||| ||||| | ||||   ||||||||||| |||||||||||||||||||    
T  45230293 taggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttc 45230351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 45243555 - 45243613
Alignment:
Q  265 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 323  Q
    |||||||||||| ||||||| |||    |||||| ||||||||||||||||||||||||    
T  45243555 taggaattccttgaacataagtaagttgttcactgttgagatcataccaaaacagcttc 45243613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 401 - 455
Target Start/End: Original strand, 26574882 - 26574936
Alignment:
Q  401 gaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatat 455  Q
    ||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||    
T  26574882 gaaacacgatttaaccacagtaaaaagtttacaccaactatctctacatccatat 26574936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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