View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16590_low_7 (Length: 415)

Name: NF16590_low_7
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16590_low_7
NF16590_low_7
[»] chr6 (6 HSPs)
chr6 (1-399)||(33575610-33576008)
chr6 (40-200)||(5978666-5978826)
chr6 (118-187)||(33568636-33568705)
chr6 (225-275)||(5978591-5978641)
chr6 (296-347)||(33568470-33568521)
chr6 (102-148)||(19747033-19747079)
[»] chr3 (3 HSPs)
chr3 (58-194)||(36339760-36339896)
chr3 (319-362)||(36339586-36339629)
chr3 (223-275)||(36339679-36339731)
[»] scaffold0707 (2 HSPs)
scaffold0707 (118-187)||(5030-5099)
scaffold0707 (296-347)||(4864-4915)
[»] chr1 (2 HSPs)
chr1 (124-174)||(17954036-17954086)
chr1 (115-162)||(39379422-39379469)
[»] chr7 (5 HSPs)
chr7 (313-347)||(22020920-22020954)
chr7 (124-174)||(24035416-24035466)
chr7 (105-163)||(26237278-26237336)
chr7 (118-163)||(26229881-26229926)
chr7 (118-162)||(24391079-24391123)
[»] chr4 (2 HSPs)
chr4 (306-347)||(2910546-2910587)
chr4 (114-162)||(3557388-3557436)


Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 33576008 - 33575610
Alignment:
Q  1 ataagagttttaaatgttcctccaacctcaattggtgcgtagtcactgtgaatagctaaccagttaatagttccactacaatatacaccatcatttccca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  33576008 ataagagttttaaatgttcctccaacctcaattggtgcgtagtcactgtgaatagctaaccagttaatagttccactaaaatgaacaccatcatttccca 33575909  T
Q  101 aaataggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgcttctccataaacctttgttctcgatctc 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||    
T  33575908 aaataggaacgaaagggaaacttcgaatatttctccaacaattatcacccgaattgaaaactttaaccttgcttctccataaacttttgttctcgatctc 33575809  T
Q  201 nnnnnnnnnnnnnnnncctatttgaagtgccactaccttgtaagttccagttaaataatcataaccaacactgaatacaaaagtgctatccctatagtca 300  Q
                    ||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33575808 tttttctttatttttacctatatgaagtgccactaccttgtaagttccggttaaataatcacaaccaacactgaatacaaaagtgctatccctatagtca 33575709  T
Q  301 cgaagaaacccaaatttatcagatattgtccttgttgcagggttccaaacatagaaccagtacttaatgtgtgtcactaagcgtggcctagaaagtaaa 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575708 cgaagaaacccaaatttatcagatattgtccttgttgcagggttccaaacatagaaccagtacttaatgtgtgtcactaagcgtggcctagaaagtaaa 33575610  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 5978826 - 5978666
Alignment:
Q  40 tagtcactgtgaatagctaaccagttaatagttccactacaatatacaccatcatttcccaaaataggaacgaaagggaaactttgaatatttctccaac 139  Q
    ||||||| ||||||||||| ||| ||||  ||||||||  |||  ||||||||||| || | || |||||| ||||| ||||||||||| | ||||||||    
T  5978826 tagtcaccgtgaatagctagccaattaaccgttccactcaaatgcacaccatcattcccgataagaggaaccaaaggaaaactttgaatctctctccaac 5978727  T
Q  140 aattatcacccaaattgaaaacttaaaccttgcttctccataaacctttgttctcgatctc 200  Q
    ||  |||||||||| |||||||    |||||||||||||||||||||| | ||||| ||||    
T  5978726 aaaaatcacccaaactgaaaaccctcaccttgcttctccataaaccttcggtctcggtctc 5978666  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 33568705 - 33568636
Alignment:
Q  118 aaactttgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgcttctccataaacctt 187  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||   ||||   |||||||||||||||    
T  33568705 aaactttgaatatttctccaacaactatcacccaaactgaaaactcgcacctcatttctccataaacctt 33568636  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 5978641 - 5978591
Alignment:
Q  225 aagtgccactaccttgtaagttccagttaaataatcataaccaacactgaa 275  Q
    |||||||||||||||||| |||||||||||||||||| |||| | ||||||    
T  5978641 aagtgccactaccttgtatgttccagttaaataatcacaaccgaaactgaa 5978591  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 33568521 - 33568470
Alignment:
Q  296 agtcacgaagaaacccaaatttatcagatattgtccttgttgcagggttcca 347  Q
    ||||||||| |||||| || || ||||||||||||| |||||||||||||||    
T  33568521 agtcacgaaaaaaccctaaattttcagatattgtccctgttgcagggttcca 33568470  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 19747033 - 19747079
Alignment:
Q  102 aataggaacgaaagggaaactttgaatatttctccaacaattatcac 148  Q
    ||||||||  ||||||||||| | |||||||||||||||||||||||    
T  19747033 aataggaatcaaagggaaactctcaatatttctccaacaattatcac 19747079  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 58 - 194
Target Start/End: Complemental strand, 36339896 - 36339760
Alignment:
Q  58 aaccagttaatagttccactacaatatacaccatcatttcccaaaataggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattga 157  Q
    ||||||||||||| ||||||  |||  ||||||||||| |  | || |||||| ||||||||||||||||||| |||||||||||||||||| ||| | |    
T  36339896 aaccagttaatagctccactcaaatgcacaccatcattccatataagaggaaccaaagggaaactttgaatatatctccaacaattatcaccaaaactaa 36339797  T
Q  158 aaacttaaaccttgcttctccataaacctttgttctc 194  Q
    |||||   ||||||||||||||||||| || ||||||    
T  36339796 aaactgccaccttgcttctccataaactttcgttctc 36339760  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 36339629 - 36339586
Alignment:
Q  319 tcagatattgtccttgttgcagggttccaaacatagaaccagta 362  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  36339629 tcagatattgtccttgttgcagggttccaaaaacagaaccagta 36339586  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 36339731 - 36339679
Alignment:
Q  223 tgaagtgccactaccttgtaagttccagttaaataatcataaccaacactgaa 275  Q
    ||||| |||||||||||||||||||||||||||  |||| |||||| ||||||    
T  36339731 tgaagcgccactaccttgtaagttccagttaaacgatcacaaccaaaactgaa 36339679  T

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Target: scaffold0707 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 5099 - 5030
Alignment:
Q  118 aaactttgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgcttctccataaacctt 187  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||   ||||   |||||||||||||||    
T  5099 aaactttgaatatttctccaacaactatcacccaaactgaaaactcgcacctcatttctccataaacctt 5030  T

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Target: scaffold0707; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 4915 - 4864
Alignment:
Q  296 agtcacgaagaaacccaaatttatcagatattgtccttgttgcagggttcca 347  Q
    ||||||||| |||||| || || ||||||||||||| |||||||||||||||    
T  4915 agtcacgaaaaaaccctaaattttcagatattgtccctgttgcagggttcca 4864  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 17954036 - 17954086
Alignment:
Q  124 tgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgctt 174  Q
    |||||||||||||||||||||||||||||| || |||||| ||||| ||||    
T  17954036 tgaatatttctccaacaattatcacccaaactgtaaactttaacctcgctt 17954086  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 39379422 - 39379469
Alignment:
Q  115 gggaaactttgaatatttctccaacaattatcacccaaattgaaaact 162  Q
    |||||||||| |||||||||||||  ||||||||||||| ||||||||    
T  39379422 gggaaactttcaatatttctccaaacattatcacccaaactgaaaact 39379469  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 22020954 - 22020920
Alignment:
Q  313 aatttatcagatattgtccttgttgcagggttcca 347  Q
    ||||||||||||||||||||||| |||||||||||    
T  22020954 aatttatcagatattgtccttgtagcagggttcca 22020920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 24035466 - 24035416
Alignment:
Q  124 tgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgctt 174  Q
    |||||||||||||||||||||||||| | |||||||| || |||| |||||    
T  24035466 tgaatatttctccaacaattatcaccaagattgaaaattttaaccctgctt 24035416  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 26237336 - 26237278
Alignment:
Q  105 aggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaactt 163  Q
    ||||||||  || ||||||||||||||||||||||| ||| |||||||| | |||||||    
T  26237336 aggaacgaccggaaaactttgaatatttctccaacagttaacacccaaactaaaaactt 26237278  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 26229926 - 26229881
Alignment:
Q  118 aaactttgaatatttctccaacaattatcacccaaattgaaaactt 163  Q
    ||||||||||||||||||||||| ||| |||||||| | |||||||    
T  26229926 aaactttgaatatttctccaacagttaccacccaaactaaaaactt 26229881  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 24391123 - 24391079
Alignment:
Q  118 aaactttgaatatttctccaacaattatcacccaaattgaaaact 162  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||    
T  24391123 aaactttgaatatttctccaaatattatcacccaaactaaaaact 24391079  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 2910587 - 2910546
Alignment:
Q  306 aaacccaaatttatcagatattgtccttgttgcagggttcca 347  Q
    |||||| ||||||| ||||||||||||||| |||||||||||    
T  2910587 aaaccctaatttattagatattgtccttgtggcagggttcca 2910546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 3557436 - 3557388
Alignment:
Q  114 agggaaactttgaatatttctccaacaattatcacccaaattgaaaact 162  Q
    ||||||||||| |||||||||||||  ||||||||| ||| ||||||||    
T  3557436 agggaaactttcaatatttctccaaacattatcacctaaactgaaaact 3557388  T

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