View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16590_low_8 (Length: 406)

Name: NF16590_low_8
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16590_low_8
NF16590_low_8
[»] chr4 (15 HSPs)
chr4 (28-406)||(24477667-24478045)
chr4 (19-191)||(24421694-24421866)
chr4 (19-191)||(24469857-24470029)
chr4 (203-399)||(24421393-24421589)
chr4 (203-399)||(24470134-24470330)
chr4 (203-285)||(24406619-24406701)
chr4 (311-375)||(24482203-24482267)
chr4 (347-402)||(24421246-24421301)
chr4 (332-402)||(24470743-24470813)
chr4 (347-402)||(24470422-24470477)
chr4 (332-402)||(24420574-24420644)
chr4 (347-393)||(24470614-24470660)
chr4 (347-393)||(24477392-24477438)
chr4 (332-405)||(24420667-24420740)
chr4 (356-405)||(24481510-24481559)
[»] scaffold0879 (2 HSPs)
scaffold0879 (19-191)||(4117-4289)
scaffold0879 (347-402)||(4473-4528)
[»] chr1 (4 HSPs)
chr1 (374-406)||(11902377-11902409)
chr1 (374-402)||(11879685-11879713)
chr1 (350-402)||(11902065-11902117)
chr1 (350-402)||(52821119-52821171)
[»] chr2 (2 HSPs)
chr2 (350-406)||(41899979-41900035)
chr2 (350-394)||(41900279-41900323)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 28 - 406
Target Start/End: Complemental strand, 24478045 - 24477667
Alignment:
Q  28 aaatcttataatctatgcttgggcaacactatacaaagagtgggaatgcaaacttaagcaatcacagtaactagctatcactcttccaaggaactgagta 127  Q
    ||||||||||||||||||||||  ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24478045 aaatcttataatctatgcttggaaaacactatataaagagttagaatgcaaacttaagcaatcacagtaactagctatcactcttccaaggaactgagta 24477946  T
Q  128 cagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcaactatattagtccaagtcatggacagcagccaccat 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  24477945 cagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatctatattagtccaagtcatggacagcaggcaccat 24477846  T
Q  228 attattccaaatcacctccatattactacaagttcccacctccgctatctctatcacctccaactccctatgtccacaaatacccaccttattactacat 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  24477845 attattccaaatcacctccatattactacaagttcccacctccgccatctctatcacctccacctccctatgtctgcaaatacccaccttattactacat 24477746  T
Q  328 atttccacctccacgatccccatcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcaccacct 406  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24477745 atatccacctccacgatccccatcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcaccacct 24477667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 24421866 - 24421694
Alignment:
Q  19 gaaattaagaaatcttataatctatgcttgggcaacactatacaaagagtgggaatgcaaacttaagcaatcacagtaactagctatcactcttccaagg 118  Q
    |||||||||||||||||||||  | ||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24421866 gaaattaagaaatcttataattcaagcttgggcaacactatataaagagttggaatgcaaacataagcaatcacagtaactagctatcactcttccaagg 24421767  T
Q  119 aactgagtacagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24421766 aactgagtacagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactca 24421694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 24469857 - 24470029
Alignment:
Q  19 gaaattaagaaatcttataatctatgcttgggcaacactatacaaagagtgggaatgcaaacttaagcaatcacagtaactagctatcactcttccaagg 118  Q
    |||||||||||||||||||||  | ||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24469857 gaaattaagaaatcttataattcaagcttgggcaacactatataaagagttggaatgcaaacataagcaatcacagtaactagctatcactcttccaagg 24469956  T
Q  119 aactgagtacagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24469957 aactgagtacagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactca 24470029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 203 - 399
Target Start/End: Complemental strand, 24421589 - 24421393
Alignment:
Q  203 ccaagtcatggacagcagccaccatattattccaaatcacctccatattactacaagttcccacctccgctatctctatcacctccaactccctatgtcc 302  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||||||| |  |||| ||| || ||| |||| |||||||    
T  24421589 ccaagtcatggacaacagccaccatattatttcaaatcacctccatattactacaaatccccacctccaccttctccatcgccaccacctccatatgtcc 24421490  T
Q  303 acaaatacccaccttattactacatatttccacctccacgatccccatcaccaccaccaccttatgtctataagtctcctccaccaccatctccctc 399  Q
    |||||||||||||||||||||||| || ||||||||||| ||| || |||||||| || || ||||| || ||||| || ||||| |||||||||||    
T  24421489 acaaatacccaccttattactacaaatctccacctccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctc 24421393  T

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Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 203 - 399
Target Start/End: Original strand, 24470134 - 24470330
Alignment:
Q  203 ccaagtcatggacagcagccaccatattattccaaatcacctccatattactacaagttcccacctccgctatctctatcacctccaactccctatgtcc 302  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||||||| |  |||| ||| || ||| |||| |||||||    
T  24470134 ccaagtcatggacaacagccaccatattatttcaaatcacctccatattactacaaatccccacctccaccttctccatcgccaccacctccatatgtcc 24470233  T
Q  303 acaaatacccaccttattactacatatttccacctccacgatccccatcaccaccaccaccttatgtctataagtctcctccaccaccatctccctc 399  Q
    |||||||||||||||||||||||| || ||||||||||| ||| || |||||||| || || ||||| || ||||| || ||||| |||||||||||    
T  24470234 acaaatacccaccttattactacaaatctccacctccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctc 24470330  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 24406701 - 24406619
Alignment:
Q  203 ccaagtcatggacagcagccaccatattattccaaatcacctccatattactacaagttcccacctccgctatctctatcacc 285  Q
    ||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||  ||||||||| | ||||| ||||||    
T  24406701 ccaagtcatggccagcagccaccatattatttcaaaccacctccatattactacaagaccccacctccaccatctccatcacc 24406619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 375
Target Start/End: Complemental strand, 24482267 - 24482203
Alignment:
Q  311 ccaccttattactacatatttccacctccacgatccccatcaccaccaccaccttatgtctataa 375  Q
    ||||| |||||||||| || |||||| |||| ||| |||||||||||||| ||||||||||||||    
T  24482267 ccaccatattactacaaatctccaccaccaccatctccatcaccaccacctccttatgtctataa 24482203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 402
Target Start/End: Complemental strand, 24421301 - 24421246
Alignment:
Q  347 ccatcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcacc 402  Q
    |||||||||||||| || |||||||| ||||||||||| |||||||| ||||||||    
T  24421301 ccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacc 24421246  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 402
Target Start/End: Original strand, 24470743 - 24470813
Alignment:
Q  332 ccacctccacgatccccatcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcacc 402  Q
    |||||||||| ||||||||| ||||||||||| |||||||| || ||||| || |||||||| || |||||    
T  24470743 ccacctccaccatccccatctccaccaccaccatatgtctacaaatctccacccccaccatcaccttcacc 24470813  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 402
Target Start/End: Original strand, 24470422 - 24470477
Alignment:
Q  347 ccatcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcacc 402  Q
    |||||||||||||| || |||||||| ||||||||||| |||||| | ||||||||    
T  24470422 ccatcaccaccacctccatatgtctacaagtctcctcctccaccaacaccctcacc 24470477  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 402
Target Start/End: Complemental strand, 24420644 - 24420574
Alignment:
Q  332 ccacctccacgatccccatcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcacc 402  Q
    ||||| |||| |||||| ||||||||||| || |||||||||||||| ||||| || || ||||| |||||    
T  24420644 ccaccaccaccatccccttcaccaccacctccatatgtctataagtcccctcctcctccttctccttcacc 24420574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 393
Target Start/End: Original strand, 24470614 - 24470660
Alignment:
Q  347 ccatcaccaccaccaccttatgtctataagtctcctccaccaccatc 393  Q
    |||||||||||||| || |||||||| ||||||||||| ||||||||    
T  24470614 ccatcaccaccacctccatatgtctacaagtctcctcctccaccatc 24470660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 24477438 - 24477392
Alignment:
Q  347 ccatcaccaccaccaccttatgtctataagtctcctccaccaccatc 393  Q
    |||||||||||||| || |||||||| ||||||||||| ||||||||    
T  24477438 ccatcaccaccacctccatatgtctacaagtctcctcctccaccatc 24477392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 405
Target Start/End: Complemental strand, 24420740 - 24420667
Alignment:
Q  332 ccacctccacgatccccatcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcaccacc 405  Q
    ||||||||||  || ||||| |||||||| || || || ||||| |||||||| ||||||||||| ||||||||    
T  24420740 ccacctccaccgtctccatccccaccacctccatacgtttataaatctcctcctccaccatctccttcaccacc 24420667  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 24481559 - 24481510
Alignment:
Q  356 ccaccaccttatgtctataagtctcctccaccaccatctccctcaccacc 405  Q
    ||||| || |||||||| ||||||||||| ||||||||||| ||||||||    
T  24481559 ccacctccatatgtctacaagtctcctcctccaccatctccatcaccacc 24481510  T

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Target: scaffold0879 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 4117 - 4289
Alignment:
Q  19 gaaattaagaaatcttataatctatgcttgggcaacactatacaaagagtgggaatgcaaacttaagcaatcacagtaactagctatcactcttccaagg 118  Q
    |||||||||||||||||||||  | ||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4117 gaaattaagaaatcttataattcaagcttgggcaacactatataaagagttggaatgcaaacataagcaatcacagtaactagctatcactcttccaagg 4216  T
Q  119 aactgagtacagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4217 aactgagtacagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactca 4289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 402
Target Start/End: Original strand, 4473 - 4528
Alignment:
Q  347 ccatcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcacc 402  Q
    |||||||||||||| || |||||||| ||||||||||| |||||||| ||||||||    
T  4473 ccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacc 4528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 11902377 - 11902409
Alignment:
Q  374 aagtctcctccaccaccatctccctcaccacct 406  Q
    |||||||||||||||||||||||||||||||||    
T  11902377 aagtctcctccaccaccatctccctcaccacct 11902409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 402
Target Start/End: Original strand, 11879685 - 11879713
Alignment:
Q  374 aagtctcctccaccaccatctccctcacc 402  Q
    |||||||||||||||||||||||||||||    
T  11879685 aagtctcctccaccaccatctccctcacc 11879713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 11902065 - 11902117
Alignment:
Q  350 tcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcacc 402  Q
    ||||||||||| |||||||| || ||||| || |||||||||||||| |||||    
T  11902065 tcaccaccacctccttatgtatacaagtcaccaccaccaccatctccttcacc 11902117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 52821171 - 52821119
Alignment:
Q  350 tcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcacc 402  Q
    ||||| |||||||||||   ||| ||||||||||||||||| |||||||||||    
T  52821171 tcacctccaccaccttactactacaagtctcctccaccaccctctccctcacc 52821119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 406
Target Start/End: Complemental strand, 41900035 - 41899979
Alignment:
Q  350 tcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcaccacct 406  Q
    ||||| |||||||| |||||||| ||||| || |||||||| || ||||||||||||    
T  41900035 tcacctccaccaccatatgtctacaagtccccaccaccaccttccccctcaccacct 41899979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 41900323 - 41900279
Alignment:
Q  350 tcaccaccaccaccttatgtctataagtctcctccaccaccatct 394  Q
    ||||||||||| || |||||||| ||||||||||| |||||||||    
T  41900323 tcaccaccacctccatatgtctacaagtctcctcctccaccatct 41900279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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