View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16590_low_9 (Length: 392)
Name: NF16590_low_9
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 43855490 - 43855849
Alignment:
| Q |
16 |
gacactgtgagtgagtttcaagaactaaagtggttctttacttgtttttcatcctataaaacattttgggatctatctaaattgatacgcaagttccaat |
115 |
Q |
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| T |
43855490 |
gacactgtgagtgactttctagaactaaagtggttctttacttgtttttcatcctataaaacattatcggatctatctaaattgatacgcaagttccaat |
43855589 |
T |
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| Q |
116 |
ttccggcgttgtgaagggcgtgtgttagggcgggaggcgtggtggtacatcgtgtgcgcttcctttctattcgcactcaaagcacgctgctcaaagactc |
215 |
Q |
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|||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43855590 |
atccggcgttgaggagggcgtgtgttagggcgggaggcgtgttggtacatcgtgtgcgcttcctttctattcgcacccaaagcacgctgctcaaagactc |
43855689 |
T |
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| Q |
216 |
acctcacgtggatacgagttattcaagaatgaagaatatactccgatgcatgcaatttttactcccaaggacaatgt-------aacttcaaacaagtgg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43855690 |
acctcacgtggatacgagttattcaagaatgaagaatatactccgatgcatgcaatttttactcccaaggacaatgtaacttcaaacttcaaacaagtgg |
43855789 |
T |
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| Q |
309 |
cttagagttacttgccaatggctccttcttcaacggtagtgtgtacacacggacaatact |
368 |
Q |
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| T |
43855790 |
cttagagttacttgccaatggctccttcttcaacggtagtgtgtacacacggacaatact |
43855849 |
T |
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