View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16591_high_3 (Length: 329)
Name: NF16591_high_3
Description: NF16591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16591_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 46315548 - 46315848
Alignment:
| Q |
16 |
caaatcattgggatggatgatcttaatttcattttgccatttttccccaactcgttatatttactcattgtatgtttgcattgaattgcagctattactg |
115 |
Q |
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| T |
46315548 |
caaatcattgggatggatgatcttaatttcattttgccattttcccccaactcgttatatgtacttattgtatgtttgcattgaattgcagctattactg |
46315647 |
T |
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| Q |
116 |
gagatttctttgttggcattggtattggttttgaaaactctgctggaccagaaaagcatcaagcagttgccttgagagtccaatctgacagatcaatttt |
215 |
Q |
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| T |
46315648 |
gagatttctttgttggcattggtattggttttgaaaactctgctggaccagaaaagcatcaagcagttgccttgagagtccaatctgacagatcaatttt |
46315747 |
T |
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| Q |
216 |
ctacaaatgcagaatggatggttaccaagacacactttacgctcacaccatgcgtcaattctaccgtgattgtattatctcaggtaccattgacttcgtc |
315 |
Q |
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| T |
46315748 |
ttacaaatgcagaatggatggttaccaagacacactttacgctcacaccatgcgtcaattctaccgtgattgtattatctcaggtaccattgacttcgtc |
46315847 |
T |
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| Q |
316 |
t |
316 |
Q |
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| T |
46315848 |
t |
46315848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 316
Target Start/End: Complemental strand, 37154806 - 37154718
Alignment:
| Q |
228 |
aatggatggttaccaagacacactttacgctcacaccatgcgtcaattctaccgtgattgtattatctcaggtaccattgacttcgtct |
316 |
Q |
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| T |
37154806 |
aatggatggatatcaagacacactttatgtacacgccatgcgtcaattttaccgtgactgtactatttcaggtaccatcgactttgtct |
37154718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 37150557 - 37150659
Alignment:
| Q |
214 |
ttctacaaatgcagaatggatggttaccaagacacactttacgctcacaccatgcgtcaattctaccgtgattgtattatctcaggtaccattgacttcg |
313 |
Q |
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| T |
37150557 |
ttctacaattgctcaatggatggatatcaagacacactttatgtacacgccatgcgtcaattctaccgtgactgcaccatttcaggtaccatcgactttg |
37150656 |
T |
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| Q |
314 |
tct |
316 |
Q |
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||| |
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| T |
37150657 |
tct |
37150659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 37159382 - 37159484
Alignment:
| Q |
214 |
ttctacaaatgcagaatggatggttaccaagacacactttacgctcacaccatgcgtcaattctaccgtgattgtattatctcaggtaccattgacttcg |
313 |
Q |
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| T |
37159382 |
ttctacaattgctcaatggatggatatcaagacacactttatgtacacgccatgcgtcaattctaccgtgactgcaccatttcaggtaccatcgactttg |
37159481 |
T |
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| Q |
314 |
tct |
316 |
Q |
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||| |
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| T |
37159482 |
tct |
37159484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 37162519 - 37162466
Alignment:
| Q |
259 |
cacaccatgcgtcaattctaccgtgattgtattatctcaggtaccattgacttc |
312 |
Q |
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| T |
37162519 |
cacaccatgcgtcaattttatcgtgattgtacaatttcaggcaccattgacttc |
37162466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 316
Target Start/End: Complemental strand, 91898 - 91810
Alignment:
| Q |
228 |
aatggatggttaccaagacacactttacgctcacaccatgcgtcaattctaccgtgattgtattatctcaggtaccattgacttcgtct |
316 |
Q |
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| T |
91898 |
aatggatggatatcaagacacactttatgtacacgccatgcgtcaattttaccgcgactgtactatttcaggtaccatcgactttgtct |
91810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 316
Target Start/End: Complemental strand, 95205 - 95117
Alignment:
| Q |
228 |
aatggatggttaccaagacacactttacgctcacaccatgcgtcaattctaccgtgattgtattatctcaggtaccattgacttcgtct |
316 |
Q |
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| T |
95205 |
aatggatggatatcaagacacactttatgtacacgccatgcgtcaattttaccgcgactgtactatttcaggtaccatcgactttgtct |
95117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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