View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16591_high_5 (Length: 251)
Name: NF16591_high_5
Description: NF16591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16591_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 33126004 - 33126242
Alignment:
| Q |
5 |
tcgtgtcattggagtcggaaggaaggaaaggtgaagattggagagaagatttgagagaaaaagcatggttgttgtcgatgttgaacgagattgtccgaga |
104 |
Q |
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| T |
33126004 |
tcgtgtcataggagtcggaaggaaggaaaagtgaagattgaagagaagatttgagagaaaaagcatggttgttgtcgatgttgaacgagattgtccgaga |
33126103 |
T |
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| Q |
105 |
gataaacaacgttgatgttgtcttaatagaccaaagtagtttttcgaaaggacaatatagttccaagagtaggttgtgatgtgaagccaacatgattcgg |
204 |
Q |
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| T |
33126104 |
gataaacaacgttgatgttgtcttaatagaccaaagtagtttttagaaaggacaatatagttccaagagtaggctgtgatgtgaagccaacatgattcag |
33126203 |
T |
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| Q |
205 |
acactacattaactactcctctatattatgcctatgttt |
243 |
Q |
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| T |
33126204 |
acactacattaactactcctctatattatgcttatgttt |
33126242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 33126522 - 33126641
Alignment:
| Q |
65 |
aagcatggttgttgtcgatgttgaacgagattgtccgagagataaacaacgttgatgttgtcttaatagaccaaagt-agtttttcgaaaggacaatata |
163 |
Q |
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||||||||||| || ||||||||||| |||||| |||||||||||||||||||||||||| ||| ||||| ||| | |||| || ||||||||||| |
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| T |
33126522 |
aagcatggttgatgccgatgttgaactgaattgtcagagagataaacaacgttgatgttgtcacaattgaccagagtaacttttgtgataggacaatata |
33126621 |
T |
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| Q |
164 |
gttccaagagtaggttgtga |
183 |
Q |
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| T |
33126622 |
attcaaagagtaggttgtga |
33126641 |
T |
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