View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16591_low_10 (Length: 290)
Name: NF16591_low_10
Description: NF16591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16591_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 29717335 - 29717585
Alignment:
| Q |
17 |
aaaaagtatttagtttgccataaaagtaactatgttgatctctttaaaaatatcactaagagaagaattacaaattgctttcatcctttacatctccatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29717335 |
aaaaagtatttagtttgccataaaagtaactatgttgatctctttaaaaatatcactaagagaagaattacaaattgctttcatcctttacatctccatt |
29717434 |
T |
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| Q |
117 |
aacaatgtagtcaaaaagggaaatgttaacttttaagcactcaatccaaataagtactatgtatcactcatagactagacttggcttataaatccattgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29717435 |
aacaatgtagtcaaaaagggaaatgttaacttttaagcactcaatccaaataagtactatgtatcactcatagactagacttggcttataaatccattgc |
29717534 |
T |
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| Q |
217 |
ttctccaacannnnnnnctcacatttcacattctcttcaacattcaggtcc |
267 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29717535 |
ttctccaacatttttttctcacatttcacattctcttcaacattcaggtcc |
29717585 |
T |
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