View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16591_low_12 (Length: 240)
Name: NF16591_low_12
Description: NF16591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16591_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 10194099 - 10193958
Alignment:
| Q |
82 |
cagtaaagtaaattgaattctattactgaaaagataagggataaacttccctagatctgttacaattcctcaagttccctcactgcttacttttattgac |
181 |
Q |
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| T |
10194099 |
cagtaaagtaaattgaattctattactgaaaagataagggataaacttccctagatctgttacaattcctcaagttccctcactgcttacttttattgac |
10194000 |
T |
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| Q |
182 |
ttatttccatcatatatgtaactaacacctaactgtcaccaa |
223 |
Q |
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| T |
10193999 |
ttatttccatcatatatgtaactaacacctaactgtcaccaa |
10193958 |
T |
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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 30479865 - 30479946
Alignment:
| Q |
18 |
aaagtattcgctaagatatgaactatgtttacctggaaaccaacgataaccagtaaagagatatcag-taaagtaaattgaa |
98 |
Q |
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| T |
30479865 |
aaagtattcgctaagatatgaactatgtttacctggaaaccaacgataaccagtaaagagatatcagttaaaggaaattgaa |
30479946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 30340435 - 30340354
Alignment:
| Q |
18 |
aaagtattcgctaagatatgaactatgtttacctggaaaccaacgataaccagtaaagagatatcag-taaagtaaattgaa |
98 |
Q |
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| T |
30340435 |
aaagtattcgctaagatatgaactatgtttacctggaaaccaacgataaccagcaaagagatatcagttaaaggaaattgaa |
30340354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 30680949 - 30680867
Alignment:
| Q |
18 |
aaagtattcgctaagatatgaactatg-tttacctggaaaccaacgataaccagtaaagagatatcag-taaagtaaattgaa |
98 |
Q |
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| T |
30680949 |
aaagtattcactaagatatgaactatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattgaa |
30680867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 30717089 - 30717007
Alignment:
| Q |
18 |
aaagtattcgctaagatatgaactatg-tttacctggaaaccaacgataaccagtaaagagatatcag-taaagtaaattgaa |
98 |
Q |
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| T |
30717089 |
aaagtattcactaagatatgaactatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattgaa |
30717007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 30746023 - 30746104
Alignment:
| Q |
18 |
aaagtattcgctaagatatgaactatg-tttacctggaaaccaacgataaccagtaaagagatatcag-taaagtaaattga |
97 |
Q |
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| T |
30746023 |
aaagtattcactaagatatgaactatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattga |
30746104 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 20303134 - 20303086
Alignment:
| Q |
51 |
tggaaaccaacgataaccagtaaagagatatcag-taaagtaaattgaa |
98 |
Q |
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| T |
20303134 |
tggaaaccaacgataaccagtaaagagatatcagttaaaggaaattgaa |
20303086 |
T |
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