View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16591_low_15 (Length: 207)
Name: NF16591_low_15
Description: NF16591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16591_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 50183594 - 50183755
Alignment:
| Q |
29 |
agatgaaatcaatatgtcaataatggatcaatcacctttcacgactccaagaggatccctttcatcaagcattggtaacgctgctgaacttgaagccaat |
128 |
Q |
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| T |
50183594 |
agatcaaatcaatatgtcaataatggatcaatcacctttcacgactccaagaggatccctttcatcaagcattggtaacgctgctgaacttgaagccaat |
50183693 |
T |
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| Q |
129 |
ctcactctcagtgataagctcagggttttcaagagttcttcctttgatcccagtgcctatgt |
190 |
Q |
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| T |
50183694 |
ctcactctcagtgataagctcagggttttcaaaagttcttcctttgatcccagtgcctatgt |
50183755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 16298307 - 16298161
Alignment:
| Q |
50 |
aatggatcaatcacctttcacgactccaagaggatccctttcatcaagcattggtaacgctgctgaacttgaagccaatc------tcactctcagtgat |
143 |
Q |
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| T |
16298307 |
aatggatcaattaccattcgtgactccaagaggatccgtttcatcaagcattggaagtgttgctgaacttgaagccaatcccaatctcactctcagtgat |
16298208 |
T |
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| Q |
144 |
aagctcagggttttcaagagttcttcctttgatcccagtgcctatgt |
190 |
Q |
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| T |
16298207 |
aagcttagggttttcaaaagctcttcatttgatcccaatgcctatgt |
16298161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 8404829 - 8404858
Alignment:
| Q |
6 |
tgagatgaagaagaagaagaattagatgaa |
35 |
Q |
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| T |
8404829 |
tgagatgaagaagaagaagaattagatgaa |
8404858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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