View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16591_low_2 (Length: 665)
Name: NF16591_low_2
Description: NF16591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16591_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 278 - 649
Target Start/End: Complemental strand, 8288483 - 8288114
Alignment:
| Q |
278 |
atggtaaaaactctttctgttacaccgtgacaccgtctcgcctcgggagccgttgcccacatatagagtcgttgtcaccagctccaaaacttggtgattt |
377 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| | |||||||||||||||||||||||||||||| |
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| T |
8288483 |
atggtaaaaactctttctgttacaccgtgaaaccgtctcgtctcgggagccattgcccgcatctagaattgttgtcaccagctccaaaacttggtgattt |
8288384 |
T |
|
| Q |
378 |
tgtgaggagaccaagccaaaccaaagtttgtttgacatggattttggtgagtgattgtgtttgttttgaaccaaaagctttgactgtcataataatttga |
477 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8288383 |
tgtgaggagaccaagccaaaccaaagtttgtttgacatggattttggtgagtgattgtgtttgttttgaaccaaaagctttgactgtca---taatttga |
8288287 |
T |
|
| Q |
478 |
acatattttgcgagtgtacaattttgaccgtcttttgagctttagactatcctttgctgatctttcaaattttgtgagtctaacgttttgaacc-gtaaa |
576 |
Q |
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|
|||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| |||| |
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| T |
8288286 |
acatattttgcgagtgtataattttgatcgtcttttgagctttagactatcttttgctgatcttccaaattttgtgagtctaccgttttgaaccaataaa |
8288187 |
T |
|
| Q |
577 |
aggtttttaggactaaacagcgatccaagtggtggagttgctgcattggcccttacttgttcaatgggtaaac |
649 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8288186 |
aggtttttaggactaaacagcgatccaagtggtggagttgctgcattggcccttacttgttcaatgggtaaac |
8288114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 8288739 - 8288535
Alignment:
| Q |
14 |
gaatcaatgaaaattttcttaagaaaataacggaataattatgagagaattggaaaatcaatgagtacatagaacagcggaatggaaaataatattgagt |
113 |
Q |
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| T |
8288739 |
gaatcaatgaaatttttcttaagaaaataacggaataattatgagagaattggaaaatcaatgagtacatagaacagcgaaatggaaaataatattgagt |
8288640 |
T |
|
| Q |
114 |
atgaaagaattgttacatcaattaaatgagtacattaaggcttatatagccaattacaccaactaactcctaactaatgtaactagtttttacaactctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8288639 |
atgaaagaattgttacatcaattaaatgagtacattaaggcttatatagccaattagaccaactaactcctaactaatgtaactagtttttacaactcta |
8288540 |
T |
|
| Q |
214 |
aaata |
218 |
Q |
| |
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||||| |
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| T |
8288539 |
aaata |
8288535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 5e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 19828801 - 19828618
Alignment:
| Q |
14 |
gaatcaatgaaaattttcttaagaaaataacggaataattatgagagaattggaaaatcaatgagtacatagaacagcggaatggaaaataatattgagt |
113 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
19828801 |
gaatcgatgaaaattttctcaagaaaataacggaataattatgagagaattggaaagtgaatgagtacatagaaaagcgaaatggaaaataatattgagt |
19828702 |
T |
|
| Q |
114 |
atgaaagaattgttacatcaattaaatgagtacattaaggcttatatagccaattacaccaactaactcctaactaatgtaact |
197 |
Q |
| |
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|||||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
19828701 |
atgaaagaattgttacatcaatgaaatgattatattaaggcttatatagccaattagaccaactaacttctaactaatgtaact |
19828618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 508 - 648
Target Start/End: Complemental strand, 37647796 - 37647655
Alignment:
| Q |
508 |
tcttttgagctttagactatcctttgctgatctttcaaattttgtgagtctaacgttttgaaccg-taaaaggtttttaggactaaacagcgatccaagt |
606 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| || | |||| |||| ||||| ||||||||||| ||||||||| || ||||||| |
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| T |
37647796 |
tcttttgagctttagactatcctttgttgatcttccaaatgatgcaactctactgtttcgaaccaataaaaggttttcaggactaaatagatttccaagt |
37647697 |
T |
|
| Q |
607 |
ggtggagttgctgcattggcccttacttgttcaatgggtaaa |
648 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
37647696 |
ggtggagttgctgcattgccccttacttgttcaatggataaa |
37647655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 19828528 - 19828472
Alignment:
| Q |
341 |
tagagtcgttgtcaccagctccaaaacttggtgattttgtgaggagaccaagccaaa |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19828528 |
tagagtcgttgtcaccagctccaaaacttggtgattttgtgaggagaccaaaccaaa |
19828472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 367 - 446
Target Start/End: Complemental strand, 26585309 - 26585230
Alignment:
| Q |
367 |
cttggtgattttgtgaggagaccaagccaaaccaaagtttgtttgacatggattttggtgagtgattgtgtttgttttga |
446 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
26585309 |
cttggtgattttgtgaggaggccaaaccaaaccaaagtttgtttgacatagattttggtgagtgattgtgtttgttttga |
26585230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 346 - 450
Target Start/End: Complemental strand, 26585684 - 26585582
Alignment:
| Q |
346 |
tcgttgtcaccagctccaaaacttggtgattttgtgaggagaccaagccaaaccaaagtttgtttgacatggattttggtgagtgattgtgtttgttttg |
445 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
26585684 |
tcgttgtcaccaactccaaaacttggtgattttgtgaggagagaaaaccaaacaaaagtttgtttaacatggattttggtgagtga--ctgtttgttttg |
26585587 |
T |
|
| Q |
446 |
aacca |
450 |
Q |
| |
|
||||| |
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|
| T |
26585586 |
aacca |
26585582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 510 - 647
Target Start/End: Original strand, 29686135 - 29686273
Alignment:
| Q |
510 |
ttttgagctttagactatcctttgctgatctttcaaattttgtgagtctaacgttttgaaccg-taaaaggtttttaggactaaacagcgatccaagtgg |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || | |||| ||||| ||||| ||||||||||| ||||||||| || ||||||||| |
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|
| T |
29686135 |
ttttgagctttagactatcctttgctgatcttccaaatgatgcaactctaccgtttcgaaccaataaaaggttttcaggactaaatagatttccaagtgg |
29686234 |
T |
|
| Q |
609 |
tggagttgctgcattggcccttacttgttcaatgggtaa |
647 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
29686235 |
tggagttgctggatttccccttacttattcaatgggtaa |
29686273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 510 - 647
Target Start/End: Original strand, 29687683 - 29687821
Alignment:
| Q |
510 |
ttttgagctttagactatcctttgctgatctttcaaattttgtgagtctaacgttttgaaccg-taaaaggtttttaggactaaacagcgatccaagtgg |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || | |||| ||||| ||||| ||||||||||| ||||||||| || ||||||||| |
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|
| T |
29687683 |
ttttgagctttagactatcctttgctgatcttccaaatgatgcaactctaccgtttcgaaccaataaaaggttttcaggactaaatagatttccaagtgg |
29687782 |
T |
|
| Q |
609 |
tggagttgctgcattggcccttacttgttcaatgggtaa |
647 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
29687783 |
tggagttgctggatttccccttacttattcaatgggtaa |
29687821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 26925799 - 26925900
Alignment:
| Q |
80 |
acatagaacagcggaatggaaaataatattgagtatgaaagaattgttacatcaattaaatgagtacattaaggcttatatagccaattacaccaactaa |
179 |
Q |
| |
|
|||||||| || | || ||||||||||||||| ||||| ||||||||||||| || || ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
26925799 |
acatagaaaagtgaaaaggaaaataatattgattatgagagaattgttacattaacta-----gtacattaaggcttatatagccaattaaaccaactaa |
26925893 |
T |
|
| Q |
180 |
ctcctaa |
186 |
Q |
| |
|
||||||| |
|
|
| T |
26925894 |
ctcctaa |
26925900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 26979391 - 26979448
Alignment:
| Q |
393 |
ccaaaccaaagtttgtttgacatggattttggtgagtgattgtgtttgttttgaacca |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
26979391 |
ccaaaccaaagtttgtttgacatggattttggtgaatgagtgtgtttattttgaacca |
26979448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 26585886 - 26585842
Alignment:
| Q |
154 |
cttatatagccaattacaccaactaactcctaactaatgtaacta |
198 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| |||||| |
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|
| T |
26585886 |
cttatatagccagttagaccaactaactcctaactaatttaacta |
26585842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 26925707 - 26925748
Alignment:
| Q |
14 |
gaatcaatgaaaattttcttaagaaaataacggaataattat |
55 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
26925707 |
gaatcgatgaaaattttctcaagaaaataacggaatagttat |
26925748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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