View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16591_low_3 (Length: 580)

Name: NF16591_low_3
Description: NF16591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16591_low_3
NF16591_low_3
[»] chr2 (15 HSPs)
chr2 (1-562)||(8403690-8404248)
chr2 (431-562)||(8429545-8429676)
chr2 (396-475)||(8368104-8368183)
chr2 (396-475)||(8401227-8401306)
chr2 (396-475)||(8422804-8422883)
chr2 (407-461)||(8411867-8411921)
chr2 (407-461)||(8433965-8434019)
chr2 (409-461)||(8376087-8376139)
chr2 (409-461)||(8431018-8431070)
chr2 (393-452)||(8459649-8459708)
chr2 (408-457)||(8416952-8417001)
chr2 (411-461)||(8405747-8405797)
chr2 (229-265)||(8368314-8368350)
chr2 (229-265)||(8401060-8401096)
chr2 (229-265)||(8422637-8422673)
[»] chr4 (2 HSPs)
chr4 (416-562)||(55336005-55336151)
chr4 (415-526)||(55330609-55330720)


Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Complemental strand, 8404248 - 8403690
Alignment:
Q  1 atgtgagggatgcaattgagaaggttttggctcttgataaagcctatccacttcctttgttaggaggtgcaatgattgcgaaatttccttccaaatttga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||    
T  8404248 atgtgagggatgcaattgagaaggttttggctcttgataaagcctatccacttcctttattaggaggtgcaatgattgagaaatttccatccaaatttga 8404149  T
Q  101 agcatctaggtggtggccatgcccaaagaaaattactggattgaacaataagatggagattaataatgagagcaataatgggtggaatttggaattggaa 200  Q
    |||||||| |||||||||||| | ||||||||| ||| ||| ||||| ||||||||||||||||   ||| | |||||||| ||||||||||| ||||||    
T  8404148 agcatctatgtggtggccatgtcaaaagaaaatgactagatagaacagtaagatggagattaat---gaggggaataatggatggaatttggagttggaa 8404052  T
Q  201 gatgaaatgaatgaggtaattgaagtggtgaagagaaaagatattgaggattatgagagattagggaatattgcatcaaagattaacaagggtttagcaa 300  Q
     |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  8404051 aatgaaatgaaggaggtaattgaagtggtgaagagaaaagatattgaggattatgagagattagggaatattgcattaaagattaacaagagtttagcaa 8403952  T
Q  301 tttttggacctttgttaacaggaattgcagctataggatcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggc 400  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403951 ttttaggacctttgttaacaggaattgcagctatagggtcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggc 8403852  T
Q  401 aactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagtt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403851 aactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagtt 8403752  T
Q  501 gaacaaactattgaagagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaa 562  Q
    ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8403751 gaagaaattattgaagagaaagatttgaataaaagagaaaatgatgaggtgtttgagatgaa 8403690  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 431 - 562
Target Start/End: Complemental strand, 8429676 - 8429545
Alignment:
Q  431 acaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaagagaaagatttgaat 530  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  8429676 acaagttggtatgatgtttcagatgtatagaaactgtagtggattttttgagcttttggaagagacggttgaagaaactattgaagataaagatttgaat 8429577  T
Q  531 aaaagagaaaatggtgaggtgtttgagatgaa 562  Q
    ||||||||||| || || |||||||| |||||    
T  8429576 aaaagagaaaacggggaagtgtttgaaatgaa 8429545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 475
Target Start/End: Complemental strand, 8368183 - 8368104
Alignment:
Q  396 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 475  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8368183 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8368104  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 475
Target Start/End: Original strand, 8401227 - 8401306
Alignment:
Q  396 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 475  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8401227 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8401306  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 475
Target Start/End: Original strand, 8422804 - 8422883
Alignment:
Q  396 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 475  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8422804 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8422883  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 407 - 461
Target Start/End: Complemental strand, 8411921 - 8411867
Alignment:
Q  407 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 461  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8411921 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8411867  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 407 - 461
Target Start/End: Complemental strand, 8434019 - 8433965
Alignment:
Q  407 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 461  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8434019 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8433965  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 461
Target Start/End: Original strand, 8376087 - 8376139
Alignment:
Q  409 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 461  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8376087 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8376139  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 461
Target Start/End: Complemental strand, 8431070 - 8431018
Alignment:
Q  409 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 461  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8431070 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8431018  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 452
Target Start/End: Original strand, 8459649 - 8459708
Alignment:
Q  393 gctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgag 452  Q
    |||||||||||||||||||| || || || |||||||| |||||||||||||| ||||||    
T  8459649 gctttggcaactgttgttaacacattagaacatggagggcaagttggtatggtttttgag 8459708  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 8417001 - 8416952
Alignment:
Q  408 gttaatacttttgagcatggaggacaagttggtatggtgtttgagatgta 457  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  8417001 gttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta 8416952  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 8405797 - 8405747
Alignment:
Q  411 aatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 461  Q
    ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||    
T  8405797 aatacttttgaacatggtggacaagttggcatggtttttgaaatgtataga 8405747  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 8368350 - 8368314
Alignment:
Q  229 tgaagagaaaagatattgaggattatgagagattagg 265  Q
    |||||||||||||||| || |||||||||||||||||    
T  8368350 tgaagagaaaagatatggaagattatgagagattagg 8368314  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 8401060 - 8401096
Alignment:
Q  229 tgaagagaaaagatattgaggattatgagagattagg 265  Q
    |||||||||||||||| || |||||||||||||||||    
T  8401060 tgaagagaaaagatatggaagattatgagagattagg 8401096  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 8422637 - 8422673
Alignment:
Q  229 tgaagagaaaagatattgaggattatgagagattagg 265  Q
    |||||||||||||||| || |||||||||||||||||    
T  8422637 tgaagagaaaagatatggaagattatgagagattagg 8422673  T

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Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 416 - 562
Target Start/End: Complemental strand, 55336151 - 55336005
Alignment:
Q  416 ttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaa 515  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || | || | |||||   |||||   ||  ||||     
T  55336151 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattttttaagatgtttggagagagtattgaaagcacacttgag 55336052  T
Q  516 gagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaa 562  Q
    |||||||||||| | |||||||||||||||||| | ||||| |||||    
T  55336051 gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaa 55336005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 415 - 526
Target Start/End: Complemental strand, 55330720 - 55330609
Alignment:
Q  415 cttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattga 514  Q
    ||||||| ||||| |||||| |||||||||| ||||| ||||||||||| |||||||||||  || |||| ||||||||||| |||||  ||||  | ||    
T  55330720 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattgga 55330621  T
Q  515 agagaaagattt 526  Q
    ||||||||||||    
T  55330620 agagaaagattt 55330609  T

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