View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16591_low_4 (Length: 511)
Name: NF16591_low_4
Description: NF16591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16591_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 1248011 - 1248507
Alignment:
| Q |
1 |
aatttcacgaatgactattttatacttagtcannnnnnnaactatatggtgttggatattcaatatcggatttatgtgcatgaatatgattgcttatata |
100 |
Q |
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| T |
1248011 |
aatttcacgaatgactattttatacttagtcatttttttaactatatggtgttggatattcaatatcggatttatgtgcatgaatatgattgcttatata |
1248110 |
T |
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| Q |
101 |
agaatacatacctcactgagcaaggtgcctagagacttatcgtcggaggccttaacggtctcctcagctttggtctccttggcttgctgttcaaccttaa |
200 |
Q |
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| T |
1248111 |
agaatacatacctcactgagcaaggtgcctagagacttatcgtcagaggccttaacggtctcctcagctttggtctccttggcttgctgttcaaccttaa |
1248210 |
T |
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| Q |
201 |
cctcctcggtgacaggctcggggacagggactggagcgtcactttcgtcggtcctagggttgccagcacagttgcccattttcaatgattattattaata |
300 |
Q |
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| T |
1248211 |
cctcctcggtgacaggctcagggacagggactggagcgtcactttcgtcggtcctagggttgccagcacagttgcccattttcaatgattattattaata |
1248310 |
T |
|
| Q |
301 |
aatgtacaatgtgggagaacaagccaagtaatttggtcttgttcttgatttgttctccctttgaatctgagcaaagaatgataaaaggatggttaattct |
400 |
Q |
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| T |
1248311 |
aatgtacaatgtgggagaacaagccaagtaagttggtcttgttcttgatttgttctccctttgaatctgagcaaagaatgataaaaggatggttaattct |
1248410 |
T |
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| Q |
401 |
ctacatgagttttatataggggtgcattgg--nnnnnnngggtggtgaagttcaatatgtggcgtggaaagttttaaggaatttaacggttgttttt |
495 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1248411 |
ctacatgagttttatataggggtgcattggtttttttttgggtggtgaagttcaatatgtggctcggaaagttttaaggaatttaacggttgttttt |
1248507 |
T |
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