View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16591_low_5 (Length: 384)
Name: NF16591_low_5
Description: NF16591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16591_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 50183404 - 50183755
Alignment:
| Q |
16 |
atctaaattatgttacttttcattttgcaatcgctagatcctaaatattagatcattcgatatctattgtgatggattcttctaattcaatcttatataa |
115 |
Q |
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| T |
50183404 |
atctaaattatgttacttttcattttgcaatcgctagatcctaaatattagatcattcgatatctattgtgatggattcttctaattcaatcttatataa |
50183503 |
T |
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| Q |
116 |
aaggatttcttatttgtaatgttatattgcatgaaagcatgcatatattcgtataatattgtaacgcattacaatatcacagaagaagagagatcaaatc |
215 |
Q |
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| T |
50183504 |
aaggatttcttatttgtaatgttatattgcatgaaagcatgcatatattcgtataatattgtaacgcattacaatatcacagaagaagagagatcaaatc |
50183603 |
T |
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| Q |
216 |
aatatgtcaataatggatcaatcacctttcacgactccaagaggatccctttcatcaagcattggtaacgctgctgaacttgaagccaatctcactctca |
315 |
Q |
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| T |
50183604 |
aatatgtcaataatggatcaatcacctttcacgactccaagaggatccctttcatcaagcattggtaacgctgctgaacttgaagccaatctcactctca |
50183703 |
T |
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| Q |
316 |
gtgataagctcagggttttcaagagttcttcctttgatcccagtgcctatgt |
367 |
Q |
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| T |
50183704 |
gtgataagctcagggttttcaaaagttcttcctttgatcccagtgcctatgt |
50183755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 152 - 367
Target Start/End: Complemental strand, 16298377 - 16298161
Alignment:
| Q |
152 |
gcatgcatatattcgtataatattgtaacgcattacaatatcacagaagaagagagatcaaatcaatatgtcaataatggatcaatcacctttcacgact |
251 |
Q |
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| T |
16298377 |
gcatgcatatataagtataatattataaggcat--caagactacacaaaaagagagatcaaatcaaaatgtcaat---ggatcaattaccattcgtgact |
16298283 |
T |
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| Q |
252 |
ccaagaggatccctttcatcaagcattggtaacgctgctgaacttgaagcc------aatctcactctcagtgataagctcagggttttcaagagttctt |
345 |
Q |
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|||||||||||| |||||||||||||||| | | |||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||| |
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| T |
16298282 |
ccaagaggatccgtttcatcaagcattggaagtgttgctgaacttgaagccaatcccaatctcactctcagtgataagcttagggttttcaaaagctctt |
16298183 |
T |
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| Q |
346 |
cctttgatcccagtgcctatgt |
367 |
Q |
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| T |
16298182 |
catttgatcccaatgcctatgt |
16298161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 16298555 - 16298517
Alignment:
| Q |
32 |
ttttcattttgcaatcgctagatcctaaatattagatca |
70 |
Q |
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||||| |||||||||| |||||||||||||||||||||| |
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| T |
16298555 |
ttttccttttgcaatcactagatcctaaatattagatca |
16298517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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