View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16591_low_7 (Length: 337)
Name: NF16591_low_7
Description: NF16591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16591_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 5 - 318
Target Start/End: Original strand, 27981715 - 27982031
Alignment:
| Q |
5 |
taataggtttgatatggttagtggagtttctaatgcgtgctaaagggttagtattctgtggtgtcaacatgaatgatgaacaagaggtgttggtttcaag |
104 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27981715 |
taataggtttgatatggttagtggagtttctaatgtgtgctaaagggttagtatcctgtggtgtcaacatgaatgatgaacaagaggtgttggtttcaag |
27981814 |
T |
|
| Q |
105 |
aggatgggtacaagttaggtactggt---ggttgttttgtttgtcagtgaaggatgatggaggtagtgactgtgaaggtctaaggaggtttggttggtct |
201 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27981815 |
aggatgggtacaagttaggtactggtggtggttgttttgtttgtcagtgaaggatgatggaggtggtgactgtgaaggtctaaggaggtttggttggtct |
27981914 |
T |
|
| Q |
202 |
cctgtggtggtttatggtgttgcattttttgttgctattctaatgttgagtgtgtgatgtagagaatgcagggaattgagtccctttagtgatacatata |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27981915 |
cctgtggtggtttatggtgttgcattttttgttgctattctaatgttgagtgtgtgatgtagagaatgcagggaattgagtccctttagtgatacatata |
27982014 |
T |
|
| Q |
302 |
gctcaacccctgcttcc |
318 |
Q |
| |
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||||||||||||||||| |
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| T |
27982015 |
gctcaacccctgcttcc |
27982031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 5 - 318
Target Start/End: Original strand, 28068245 - 28068561
Alignment:
| Q |
5 |
taataggtttgatatggttagtggagtttctaatgcgtgctaaagggttagtattctgtggtgtcaacatgaatgatgaacaagaggtgttggtttcaag |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28068245 |
taataggtttgatatggttagtggagtttctaatgtgtgctaaagggttagtatcctgtggtgtcaacatgaatgatgaacaagaggtgttggtttcaag |
28068344 |
T |
|
| Q |
105 |
aggatgggtacaagttaggtactggt---ggttgttttgtttgtcagtgaaggatgatggaggtagtgactgtgaaggtctaaggaggtttggttggtct |
201 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28068345 |
aggatgggtacaagttaggtactggtggtggttgttttgtttgtcagtgaaggatgatggaggtggtgactgtgaaggtctaaggaggtttggttggtct |
28068444 |
T |
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| Q |
202 |
cctgtggtggtttatggtgttgcattttttgttgctattctaatgttgagtgtgtgatgtagagaatgcagggaattgagtccctttagtgatacatata |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28068445 |
cctgtggtggtttatggtgttgcattttttgttgctattctaatgttgagtgtgtgatgtagagaatgcagggaattgagtccctttagtgatacatata |
28068544 |
T |
|
| Q |
302 |
gctcaacccctgcttcc |
318 |
Q |
| |
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||||||||||||||||| |
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| T |
28068545 |
gctcaacccctgcttcc |
28068561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 10 - 294
Target Start/End: Complemental strand, 26418514 - 26418223
Alignment:
| Q |
10 |
ggtttgatatggttagtggagtttctaatgcgtgctaaagggttagtattctgtggtgtcaacatgaatgatgaacaagaggtgttggtttcaagaggat |
109 |
Q |
| |
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||||||||||||||| |||| ||| |||||| ||||||||||| ||| ||||||||||||| ||||| |||| |||||||||||||||| ||||||| |
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| T |
26418514 |
ggtttgatatggttactggaatttgtaatgcatgctaaagggtcagtggcctgtggtgtcaacgggaatggtgaagaagaggtgttggtttcgagaggat |
26418415 |
T |
|
| Q |
110 |
gggtacaagttaggtactggtggttgttttgtttgtcagtgaaggat------gatggaggtagtgactgtgaaggtctaaggaggtttggttggtctcc |
203 |
Q |
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||||||||||||||||| |||||||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26418414 |
gggtacaagttaggtaccagtggttgtttggtttgtcagcgaaggatcatggaggtggaggtagtgactgtgaaggtctaaggagggttggttggtctcc |
26418315 |
T |
|
| Q |
204 |
tgtggtggtttatggtgttgcattttttgttgctattctaatgttgagtgtg---tgatgtagagaatgcagggaattgagtccctttagtgat |
294 |
Q |
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| | |||||||||| ||||||| ||||||| ||| |||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
26418314 |
tatcgtggtttatgatgttgca--ttttgttactaatctagtgttgagtgtgtcatgatgtagagaatgcagggaaccgagtccctttagtgat |
26418223 |
T |
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