View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16591_low_8 (Length: 336)
Name: NF16591_low_8
Description: NF16591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16591_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 43952331 - 43952553
Alignment:
| Q |
16 |
atcaaaaacaaaaacccacaacctcaaattcgattaaccaaaatgctctctggctgcaaacatcctaaaacaccatctttttccttagataacggcagaa |
115 |
Q |
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| T |
43952331 |
atcaaaaacaaaaacccacaacctcaaattcgattaaccaaaatgctctctggctgcaaacatcctaaaacaccatctttttccttagataacggcagaa |
43952430 |
T |
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| Q |
116 |
acatatcatcctctaacgccgttaacaacaataacaacaaaatcaatgatgctgcaacactagctgacgttgaccgttttctctttgagaatttcaagtc |
215 |
Q |
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| T |
43952431 |
acatatcatcctctaacgccgttaacaacaataacaacaaaatcaatgatgctgcaacactagctgacgttgaccgttttctctttgagaatttcaagtc |
43952530 |
T |
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| Q |
216 |
tctatatttcaaagatgacgaag |
238 |
Q |
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| T |
43952531 |
tctatatttcaaagatgatgaag |
43952553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 3236178 - 3236116
Alignment:
| Q |
172 |
acactagctgacgttgaccgttttctctttgagaatttcaagtctctatatttcaaagatgac |
234 |
Q |
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| T |
3236178 |
acactagaagacgttgaccgttttctcttcgagaatttcaagtctttatacctcgaagatgac |
3236116 |
T |
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