View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_10 (Length: 560)
Name: NF16592_high_10
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 14 - 531
Target Start/End: Complemental strand, 8458571 - 8458054
Alignment:
| Q |
14 |
accttattaatcagtaacctttaaacctaaatatcccttctattccttaatatttcaattcacatagcaaaatttatttccaaatgcaaaattaatttta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458571 |
accttattaatcagtaacctttaaacctaaatatcccttctattccttaatatttcaattcacatagcaaaatttatttccaaatgcaaaattaatttta |
8458472 |
T |
|
| Q |
114 |
cataaatcaattataccataaccaggcttgtagtttccatacgaaataagaaaaatgcatataaatttgcgctgaccatacacacccccacttgagcatg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8458471 |
cataaatcaattataccataaccaggcttgtagtttccatacgaaataagaaaaatgcatataaagttgcgctgaccatacacacccccacttgagcatg |
8458372 |
T |
|
| Q |
214 |
tatttcagtgtgttattttgagaaatagtgaactaagaacctgagttgagccagtatcatgattatctacaaatgtgactgatcttgaaggccaccatcc |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458371 |
tatttcagtgtgttattttgagaaatagtgaactaaaaacctgagttgagccagtatcatgattatctacaaatgtgactgatcttgaaggccaccatcc |
8458272 |
T |
|
| Q |
314 |
aatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacagcttcctacaaataatggtaacatgaaaaaatgaattcaata |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458271 |
aatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacagcttcctacaaataatggtaacatgaaaaaatgaattcaata |
8458172 |
T |
|
| Q |
414 |
cctgatatacatgagactgcatgcgcatcaaagtttgtacaaagaaattaacttattgactagcaaaaaagggtaagatctaactgcaatgcttagtttt |
513 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458171 |
cctgatatacatgaaactgcatgcgtatcaaagtttgtacaaagaaattaacttattgactagcaaaaaagggtaagatctaactgcaatgcttagtttt |
8458072 |
T |
|
| Q |
514 |
caaaccttcatttaacat |
531 |
Q |
| |
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|||||||||||||||||| |
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| T |
8458071 |
caaaccttcatttaacat |
8458054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 285 - 416
Target Start/End: Original strand, 25802572 - 25802704
Alignment:
| Q |
285 |
aatgtgactgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacag-cttcctacaaa |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
25802572 |
aatgtgactgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctatcttgacagaattcctacaaa |
25802671 |
T |
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| Q |
384 |
taatggtaacatgaaaaaatgaattcaatacct |
416 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
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| T |
25802672 |
taatggtaacatgagaaaatgaattcaatacct |
25802704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 293 - 421
Target Start/End: Original strand, 6827150 - 6827279
Alignment:
| Q |
293 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacag-cttcctacaaataatggta |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| |
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| T |
6827150 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccagaattctatcttgacagaattcctacaaataatggta |
6827249 |
T |
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| Q |
392 |
acatgaaaaaatgaattcaatacctgatat |
421 |
Q |
| |
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|||||| ||||||||||||||||||||||| |
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| T |
6827250 |
acatgagaaaatgaattcaatacctgatat |
6827279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 293 - 421
Target Start/End: Complemental strand, 9822994 - 9822865
Alignment:
| Q |
293 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacag-cttcctacaaataatggta |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| |
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| T |
9822994 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccataattctatcttgacagaattcctacaaataatggta |
9822895 |
T |
|
| Q |
392 |
acatgaaaaaatgaattcaatacctgatat |
421 |
Q |
| |
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|||||| ||||||||||||||||||||||| |
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| T |
9822894 |
acatgagaaaatgaattcaatacctgatat |
9822865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 292 - 409
Target Start/End: Original strand, 18361145 - 18361263
Alignment:
| Q |
292 |
ctgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgaca-gcttcctacaaataatggt |
390 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |
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|
| T |
18361145 |
ctgatcttgaaggccaccattcaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctatcttgacatgattcctacaaataatggt |
18361244 |
T |
|
| Q |
391 |
aacatgaaaaaatgaattc |
409 |
Q |
| |
|
||||||| ||||||||||| |
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|
| T |
18361245 |
aacatgagaaaatgaattc |
18361263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 293 - 372
Target Start/End: Original strand, 27963964 - 27964043
Alignment:
| Q |
293 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacag |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27963964 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctatcttgacag |
27964043 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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