View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_high_105 (Length: 222)
Name: NF16592_high_105
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_105 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 34174579 - 34174387
Alignment:
| Q |
17 |
atcaaaagctaatgcagaaattagtagtagttgcggtggtgataaaataataatatcttcattgcaagcgcttttaagccacttttggcgtttaactata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34174579 |
atcaaaagctaatgcagaaattagtagtagttgcggtggtgataaaataataatatcttcattgcaagcacttttaagccacttttggcgtttaactata |
34174480 |
T |
|
| Q |
117 |
agtaaacaaaatcttaaaccagaagaaaataccattttcaggttaccaatagattgtaggacaagaatgtgtccaaagttagcagagaattat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34174479 |
agtaaacaaaatcttaaaccagaagaaaataccattttcaggttaccaatagattgtaggacaagaatgtgtccaaagttagcagagaattat |
34174387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 39075679 - 39075487
Alignment:
| Q |
17 |
atcaaaagctaatgcagaaattagtagtagttgcggtggtgataaaataataatatcttcattgcaagcgcttttaagccacttttggcgtttaactata |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || |||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
39075679 |
atcaaaagctaatgcagaaatcagtagtagtaatagtagtgagaaaataataatatcttcattgcaagcgcttttaagtcacgtttggcgtttaattata |
39075580 |
T |
|
| Q |
117 |
agtaaacaaaatcttaaaccagaagaaaataccattttcaggttaccaatagattgtaggacaagaatgtgtccaaagttagcagagaattat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
39075579 |
agtaaacaaaatcttaaaccagaagaaaggtctgctttcgtgttacccatagattgtaggacaagaatgtgtccaaagttagaagataattat |
39075487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 7398937 - 7398736
Alignment:
| Q |
17 |
atcaaaagctaatgcagaaattagtagt---agttgcg---gtggtgataaaataataa---tatcttcattgcaagcgcttttaagccacttttggcgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| || || ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
7398937 |
atcaaaagctaatgcagaaattagtagtggtagtagcaatagtagtgataaaataataacgatatcttcattgcaagcgcttttaagtcacctttggcgt |
7398838 |
T |
|
| Q |
108 |
ttaactataagtaaacaaaatcttaaaccagaagaaaataccattttcaggttaccaatagattgtaggacaagaatgtgtccaaagttagcagagaatt |
207 |
Q |
| |
|
||| ||||||||||||||||| ||| ||||||||| | ||| |||||| ||||||||||| ||||||||||| |||||||||| |||||||| |
|
|
| T |
7398837 |
ttatttataagtaaacaaaatcgtaattcagaagaaaggtcggcattcgtgttacccatagattgtagaacaagaatgtgcccaaagttagaagagaatt |
7398738 |
T |
|
| Q |
208 |
at |
209 |
Q |
| |
|
|| |
|
|
| T |
7398737 |
at |
7398736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University