View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_109 (Length: 214)
Name: NF16592_high_109
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_109 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 36135837 - 36136027
Alignment:
| Q |
7 |
cggatgtccaagaaaagatcgccaagacttactgctcacagaaagctttcttattgcttgtaagttctattatggttggtgcaaccaggaaaatcacgag |
106 |
Q |
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| T |
36135837 |
cggatgtccaagaaaagatcgccaagacttactgctcacagaaagctttcttattgcttgtaagttctgttatggttggtgcaaccaggaaaatcacgag |
36135936 |
T |
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| Q |
107 |
aagcattttgttttcaaacacatcaatattattgattctctgcgggcaagcaacaacctggggcgtagcagcgtagcaacagtaaaggtat |
197 |
Q |
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| T |
36135937 |
aagcattttgtttccaaacacatcaatattattgattctctgcgggcaagcaacaacctggggcgtagccgcgtagcatcagtaaaggtat |
36136027 |
T |
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Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 41337395 - 41337560
Alignment:
| Q |
11 |
tgtccaagaaaagatcgccaagacttactgctcacagaaagctttcttattgcttgtaagttctattatggttggtgcaaccaggaaaatcacgagaagc |
110 |
Q |
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| T |
41337395 |
tgtccaagaaaagatcgccaagacttgctgctcacagaaagctttcttattgcttcaaagttctgttatggttggcgcaaccagaaaaatcgagagaagc |
41337494 |
T |
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| Q |
111 |
attttgttttcaaacacatcaatattattgattctctgcgggcaagcaacaacctggggcgtagca |
176 |
Q |
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| T |
41337495 |
attttgtttccaaacacatcaatattattgatcctctgcaggaaaacaacaacctggggcatagca |
41337560 |
T |
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