View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_high_11 (Length: 554)
Name: NF16592_high_11
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 16 - 537
Target Start/End: Original strand, 2673604 - 2674125
Alignment:
| Q |
16 |
cactgataccatgtgaaagatataggataaactccattaatggaggaagagagcttgaaggagaagaaaactttattctcattgtaatatttcacacaaa |
115 |
Q |
| |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2673604 |
cactgatatcatgtgaaagatatagcataaactccattaatggaggaagagagcttgaaggagaagaaaactttattctcattgtaatatttcacacaaa |
2673703 |
T |
|
| Q |
116 |
actaaaaatacaaagtagtgtagcaatagtacatatagcacctatatcctcctaactgtggttacttctatatctaatcatagttagaaaacagttacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2673704 |
actaaaaatacaaagtagtgtagcaatagtacatatagcacctatatcctcctaactgtggttacttctatatctaatcatagttagaaaacagttacaa |
2673803 |
T |
|
| Q |
216 |
gtagttaacgacctagttaacttgcagtgcaagttaactaactaacttactaactaaatgcgcttacactagctttaacatgagactcaccatttcccaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
2673804 |
gtagttaacgacctagttaacttgcagtgcaagttaactaactaactaactaactaaatgtgcttacactagctttaacatgaagctcaccatttcccaa |
2673903 |
T |
|
| Q |
316 |
ttcagcaacaaacattcgtttacctaaaattgtgggttcaatcattggtgtgacctactgacctagattagcgagaggagcaattgaagttgcaatctca |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
2673904 |
ttcagcaacaaacattcgtttacctaaaattttgggttcaatcattggtatgacctacttacctagattaacgagaggagcaattgaagttgcaatctca |
2674003 |
T |
|
| Q |
416 |
tcattgaagaacgcattgccacagaagctggaggaattccatcaattcatgatgatgggattcatgaaattgcaagatcgtctatctcctcggtgtgttc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2674004 |
tcattgaagaacgcattgccacagaagctggaggaattccatcaattcatgatgatgggattcatgaaattgcaagatcgtctatctcctcggtgtgttc |
2674103 |
T |
|
| Q |
516 |
atccagtttcttacaccgaaaa |
537 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
2674104 |
atccagtttcttacaccgaaaa |
2674125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 27 - 259
Target Start/End: Complemental strand, 5293989 - 5293747
Alignment:
| Q |
27 |
tgtgaaagatataggataaactccattaatggaggaagagagcttgaaggagaagaaaactttattctcattgtaatatttcacacaaaactaaaaatac |
126 |
Q |
| |
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||||||| ||||| ||| |||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
5293989 |
tgtgaaaagtatagcatacactccattgatggaggaagaaagctcaaaggagaagaaaactttattctcaatgtaatatttcacacaaaac-aaaaatac |
5293891 |
T |
|
| Q |
127 |
aaagtagtg-tagcaatagtacatatagcacctatatcctcctaac-----------tgtggttacttctatatctaatcatagttagaaaacagttaca |
214 |
Q |
| |
|
|||||| | |||||| |||| |||||| || | || | ||||||| |||||||||||||||| ||||||| |||||||||| |||||| |
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|
| T |
5293890 |
-aagtagagctagcaagagtatatatagaacttgtaacttcctaacggtcaactaattgtggttacttctataggtaatcatggttagaaaacggttaca |
5293792 |
T |
|
| Q |
215 |
agtagttaacgacctagttaacttgcagtgcaagttaactaacta |
259 |
Q |
| |
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|| |||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
5293791 |
aggagttaagatcctagttaacttgtagtgcaagttaactaacta |
5293747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 27 - 259
Target Start/End: Complemental strand, 5298541 - 5298299
Alignment:
| Q |
27 |
tgtgaaagatataggataaactccattaatggaggaagagagcttgaaggagaagaaaactttattctcattgtaatatttcacacaaaactaaaaatac |
126 |
Q |
| |
|
||||||| ||||| ||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5298541 |
tgtgaaaagtatagcatacactccattgatggaggaagaaagctcaaaggagaagaaaactttattctcattgtaatatttcacacaaaac-aaaaatac |
5298443 |
T |
|
| Q |
127 |
aaagtagtg-tagcaatagtacatatagcacctatatcctc-----------ctaactgtggttacttctatatctaatcatagttagaaaacagttaca |
214 |
Q |
| |
|
|||||| | |||||| |||| |||||| || | || | || |||| |||||||||||||||| ||||||| |||||||||| |||||| |
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|
| T |
5298442 |
-aagtagagctagcaagagtatatatagaacttgtaacttcttaacggtcaactaattgtggttacttctataggtaatcatggttagaaaacggttaca |
5298344 |
T |
|
| Q |
215 |
agtagttaacgacctagttaacttgcagtgcaagttaactaacta |
259 |
Q |
| |
|
|| |||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
5298343 |
aggagttaagatcctagttaacttgtagtgcaagttaactaacta |
5298299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 27506626 - 27506544
Alignment:
| Q |
36 |
tataggataaactccattaatggaggaagagagcttgaaggagaagaaaactttattctcattgtaatatttcacacaaaact |
118 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||| ||||| | |||||||| |
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|
| T |
27506626 |
tatagcataaactccatcaatggaggaagaaagcttgaaggagaactaaaatttattctcattgtattattttagacaaaact |
27506544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 27372173 - 27372106
Alignment:
| Q |
136 |
tagcaatagtacatatagcacctatatcctcctaactgtggttacttctatatctaatcatagttaga |
203 |
Q |
| |
|
|||||| |||| ||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
27372173 |
tagcaagagtatatatatcacttatatcctcctaactgtagttacttctatagctaatcatagttaga |
27372106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 27462523 - 27462456
Alignment:
| Q |
136 |
tagcaatagtacatatagcacctatatcctcctaactgtggttacttctatatctaatcatagttaga |
203 |
Q |
| |
|
|||||| |||| ||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
27462523 |
tagcaagagtatatatatcacttatatcctcctaactgtagttacttctatagctaatcatagttaga |
27462456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 27 - 259
Target Start/End: Complemental strand, 54722393 - 54722151
Alignment:
| Q |
27 |
tgtgaaagatataggataaactccattaatggaggaagagagcttgaaggagaagaaaactttattctcattgtaatatttcacacaaaactaaaaatac |
126 |
Q |
| |
|
||||||| ||||| ||| |||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
54722393 |
tgtgaaaagtatagcatacactccattgatggaggaagaaagctcaaaggagaagaaaactttattctcactgtaatatttcacacaaaac-aaaaatac |
54722295 |
T |
|
| Q |
127 |
aaagtagtg-tagcaatagtacatatagcacctatatcctc-----------ctaactgtggttacttctatatctaatcatagttagaaaacagttaca |
214 |
Q |
| |
|
|||||| | |||||| |||| |||||| || | || | || |||| |||||||||||||||| ||||||| |||||||||| |||||| |
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|
| T |
54722294 |
-aagtagagctagcaagagtatatatagaacttgtaacttcttaacggtcaactaattgtggttacttctataggtaatcatggttagaaaacggttaca |
54722196 |
T |
|
| Q |
215 |
agtagttaacgacctagttaacttgcagtgcaagttaactaacta |
259 |
Q |
| |
|
|| |||||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
54722195 |
aggagttaagatcccagttaacttgtagtgcaagttaactaacta |
54722151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 46178105 - 46177912
Alignment:
| Q |
78 |
gaagaaaactttattctcattgtaatatttcacacaaaactaaaaatacaaagtagtgtagcaatagtacatatagcacctatatcc--tcctaact--- |
172 |
Q |
| |
|
|||||||||| |||||||||| | ||||||| |||||| | ||| ||||| ||||||||| || |||| |||||||||||| |||| |||||||| |
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|
| T |
46178105 |
gaagaaaactctattctcattatgttatttcaaacaaaattgaaattacaa-gtagtgtagaaagagtatatatagcacctacatcccctcctaactaac |
46178007 |
T |
|
| Q |
173 |
--------gtggttacttctat-atctaatcatagttagaaaacagttacaagtagttaacgacctagttaacttgcagtgcaagttaactaact |
258 |
Q |
| |
|
|||||||||||||| | |||||||| ||||| ||||||||||||| ||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
46178006 |
aactagctgtggttacttctatcaactaatcatggttaggcaacagttacaagtggttaaggtcctagttaacttgtagtgcaagttaactaact |
46177912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 21212583 - 21212676
Alignment:
| Q |
63 |
agagagcttgaaggagaagaaaactttattctcattgtaatatttcacac-aaaactaaaaatacaaagtagtgtagcaatagtacatatagcac |
156 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||| |||||| |||||||| ||| ||||||||||| || |||| ||||||||| |
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|
| T |
21212583 |
agagagcttgaaggagaagaaaacttcattctcattataatatctcacacaaaaactaactttac-aagtagtgtaggaagagtatatatagcac |
21212676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 28751314 - 28751267
Alignment:
| Q |
69 |
cttgaaggagaagaaaactttattctcattgtaatatttcacacaaaa |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
28751314 |
cttgaaggagaagaaaacttcattctcattttaatatttcacacaaaa |
28751267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 8165622 - 8165530
Alignment:
| Q |
167 |
ctaactgtggttacttctatatctaatcatagttagaaaacagttacaagtagttaacgacctagttaacttgcagtgcaagttaactaacta |
259 |
Q |
| |
|
|||||| | |||||||||||||||||| || ||||||||||||| ||| ||||| ||| |||||||| | |||||||||||||||||| |
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|
| T |
8165622 |
ctaactatagttacttctatatctaattctaattagaaaacagttttaagaggttaagatccttgttaacttccggtgcaagttaactaacta |
8165530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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