View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16592_high_16 (Length: 525)

Name: NF16592_high_16
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16592_high_16
NF16592_high_16
[»] chr7 (3 HSPs)
chr7 (16-521)||(45461142-45461647)
chr7 (16-471)||(4165651-4166106)
chr7 (16-120)||(34208160-34208264)
[»] chr6 (4 HSPs)
chr6 (167-521)||(5864795-5865149)
chr6 (24-400)||(16469201-16469577)
chr6 (16-147)||(1306846-1306977)
chr6 (403-521)||(16520836-16520954)
[»] chr2 (1 HSPs)
chr2 (16-432)||(3151713-3152129)
[»] chr4 (1 HSPs)
chr4 (16-521)||(19307392-19307897)
[»] chr1 (3 HSPs)
chr1 (344-447)||(32644029-32644132)
chr1 (344-447)||(36190678-36190781)
chr1 (341-393)||(48436118-48436170)
[»] chr3 (1 HSPs)
chr3 (341-397)||(14606342-14606398)


Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 521
Target Start/End: Original strand, 45461142 - 45461647
Alignment:
Q  16 cacaaaccgcataatgtcacctttcaattccggccaaaagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcc 115  Q
    ||||||||||||||||||||||||||| |||| |||||| |||||| ||||| |||| |||||| ||||| |||||||| ||||||||||||| ||||||    
T  45461142 cacaaaccgcataatgtcacctttcaactccgaccaaaaatctttaataaaatccatcggaatgccatccggacccggattcttatacccatcacaatcc 45461241  T
Q  116 cacactgccaccttaacttcagtctcattaaaatgataaatcaaactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcc 215  Q
    ||||||||  ||||||||||| ||||||| ||| ||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||    
T  45461242 cacactgcagccttaacttcaatctcattgaaaggataaatcaaagtatttccttccaaaacagatagtctccgaaaattcatatcatccaccctatgcc 45461341  T
Q  216 tattaatgtcatgcgcctggtaaagattttgaaaatgactgaaaactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaaa 315  Q
    ||||||| ||||||||||||||| ||||||||||||  || ||||||||| |  |||||||||| |||||||||||||||||||||||||||||| || |    
T  45461342 tattaatttcatgcgcctggtaatgattttgaaaatagcttaaaactgctgctatgacttcagatactccctccacaacatttccttcaactaaaataga 45461441  T
Q  316 agagagggcattttttcgacgttttcctgacataatagcatggaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccac 415  Q
    ||| |||| |||| |||||||| |  ||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||| |||| |||||||||    
T  45461442 agaaagggtatttcttcgacgtatgtctgacatgatagcatgaaaatatttagaatttgcatctccttctcgaagccataatgttcgcgaatgttgccac 45461541  T
Q  416 gaaatactagcatttgccctggataaagaatgtaaatcagctgacatcgcatgtaaatccgccacttcctccacagacagttcgtccacctctcccctag 515  Q
    |||||||||||||| |||||||||||||||| ||||||| |||||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||    
T  45461542 gaaatactagcattggccctggataaagaatataaatcatctgacatcacatataagtccgccacttcctccacagacagttcgttcacctctcccctag 45461641  T
Q  516 cctcca 521  Q
    ||||||    
T  45461642 cctcca 45461647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 16 - 471
Target Start/End: Complemental strand, 4166106 - 4165651
Alignment:
Q  16 cacaaaccgcataatgtcacctttcaattccggccaaaagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcc 115  Q
    ||||||||||||||||||||||||||| ||| ||||||| || ||| |||| ||||  |||||| ||||| ||||||||||||| || ||||| ||||||    
T  4166106 cacaaaccgcataatgtcacctttcaaatccagccaaaattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaatcc 4166007  T
Q  116 cacactgccaccttaacttcagtctcattaaaatgataaatcaaactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcc 215  Q
    ||||| ||  ||||||||||||||||| ||||  | ||||| |    |||| ||| |  ||||||||||||   ||||  || |||||||||||||||||    
T  4166006 cacaccgcagccttaacttcagtctcagtaaacgggtaaataagggaattttcttccgcaacagataatcttttaaaaagcaaatcatccaccctaggcc 4165907  T
Q  216 tattaatgtcatgcgcctggtaaagattttgaaaatgactgaaaactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaaa 315  Q
    |||| ||| |||||||||| ||| | | ||| || ||||||||||||||| |||  ||||| ||||||||||||||||||||||| ||||||||| || |    
T  4165906 tattcatgacatgcgcctgataatggtgttggaagtgactgaaaactgctgcccgaacttcggaaactccctccacaacatttccatcaactaaaataga 4165807  T
Q  316 agagagggcattttttcgacgttttcctgacataatagcatggaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccac 415  Q
     |||| ||  ||| ||| |||| | || |||||||| ||||| ||||||||||| ||||||||||||||| |||| |||| |  |  ||||||||||||     
T  4165806 tgagatggtgtttcttctacgtctgccggacataatggcatgaaaatatttagagtttgcatctccttcccgaagacatagtaatctcgattgttgccat 4165707  T
Q  416 gaaatactagcatttgccctggataaagaatgtaaatcagctgacatcgcatgtaa 471  Q
    |||||||| || ||||||||||||||||| |||||||||| ||||||| |||||||    
T  4165706 gaaatacttgcgtttgccctggataaagagtgtaaatcagttgacatctcatgtaa 4165651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 34208160 - 34208264
Alignment:
Q  16 cacaaaccgcataatgtcacctttcaattccggccaaaagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcc 115  Q
    ||||||||||||||||||||||||||| ||| ||||||| || ||| |||| ||||  |||||| ||||| ||||||||||||| || ||||| ||||||    
T  34208160 cacaaaccgcataatgtcacctttcaaatccagccaaaattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaatcc 34208259  T
Q  116 cacac 120  Q
    |||||    
T  34208260 cacac 34208264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 167 - 521
Target Start/End: Complemental strand, 5865149 - 5864795
Alignment:
Q  167 cctttcaaaacagataatctcccaaaattcatatcatccaccctaggcctattaatgtcatgcgcctggtaaagattttgaaaatgactgaaaactgctt 266  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||     
T  5865149 ccttccaaaacagatagtctccgaaaattcatatcatccaccctaggcctattaatttcatgcgcctgataatgattttgaaaataactgaaaactgctg 5865050  T
Q  267 ccctgacttcagaaactccctccacaacatttccttcaactaaagtaaaagagagggcattttttcgacgttttcctgacataatagcatggaaatattt 366  Q
      || |||||||| ||||||||||||| |||||||||||||||| || | || ||| ||||| |||||||| | |||||||| |||||||| ||||||||    
T  5865049 atctaacttcagatactccctccacaaaatttccttcaactaaaatagatgaaaggccatttcttcgacgtctgcctgacatgatagcatgaaaatattt 5864950  T
Q  367 agaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggataaagaatgtaaatcagctgacatcgca 466  Q
    |||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||| ||    
T  5864949 agaatttggatctccttcccgaagccataatgttcgcgattgttgccacaaaatactagcattggccttggataaagaatgtaaatcatctgacatcaca 5864850  T
Q  467 tgtaaatccgccacttcctccacagacagttcgtccacctctcccctagcctcca 521  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5864849 tgtaagtccgccacttcctccacagacagttcgttcacctctcccctagcctcca 5864795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 24 - 400
Target Start/End: Original strand, 16469201 - 16469577
Alignment:
Q  24 gcataatgtcacctttcaattccggccaaaagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgc 123  Q
    ||||||||| ||||||| | ||||||||||| || ||| |||| ||||  |||||| || || |||| |||||||| || ||||  |||||||||||  |    
T  16469201 gcataatgtgacctttccaatccggccaaaattccttaataaatcccaaaggaatgccacccggacctggactcttgtaaccattacaatcccacaccac 16469300  T
Q  124 caccttaacttcagtctcattaaaatgataaatcaaactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcctattaatg 223  Q
      ||||||||||||||||  ||||  |  |||| |    |||||||| || || |||||||||   ||||| |||||||||||||||||||||||| |||    
T  16469301 agccttaacttcagtctcggtaaatgggcaaatgagggaatttccttccataatagataatctttgaaaatacatatcatccaccctaggcctattcatg 16469400  T
Q  224 tcatgcgcctggtaaagattttgaaaatgactgaaaactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaaaagagaggg 323  Q
     |||||||||| ||| | | ||| || ||||||||||||||| |||  ||||| || ||||||||||| |||||||| ||||||||| || |||||| |     
T  16469401 acatgcgcctgataatggtgttggaagtgactgaaaactgctgcccgaacttcggatactccctccactacatttccatcaactaaaatagaagagatgt 16469500  T
Q  324 cattttttcgacgttttcctgacataatagcatggaaatatttagaatttgcatctccttcctgaagccataatgtt 400  Q
    | ||| ||| |||| | || |||||||| ||||| |||| |||||| ||| ||||||||||||||||||||||||||    
T  16469501 cttttcttctacgtctgccggacataatggcatgaaaatgtttagagttttcatctccttcctgaagccataatgtt 16469577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 1306977 - 1306846
Alignment:
Q  16 cacaaaccgcataatgtcacctttcaattccggccaaaagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcc 115  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||| ||||  |||||| ||||| ||||||||||||| || ||||| ||||||    
T  1306977 cacaaaccgcataatgtcacctttcaaatccggccaaaattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaatcc 1306878  T
Q  116 cacactgccaccttaacttcagtctcattaaa 147  Q
    ||||| ||  ||||||||||||||||| ||||    
T  1306877 cacaccgcagccttaacttcagtctcagtaaa 1306846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 403 - 521
Target Start/End: Original strand, 16520836 - 16520954
Alignment:
Q  403 cgattgttgccacgaaatactagcatttgccctggataaagaatgtaaatcagctgacatcgcatgtaaatccgccacttcctccacagacagttcgtcc 502  Q
    ||||||||||||||||||||| || |||||| |||||||||| |||||||||| ||||||| ||||||| |||   |  |||||| | ||||  || |||    
T  16520836 cgattgttgccacgaaatacttgcgtttgccttggataaagagtgtaaatcagttgacatctcatgtaagtccattatatcctcctcggacaagtcatcc 16520935  T
Q  503 acctctcccctagcctcca 521  Q
    ||||| |||||||||||||    
T  16520936 acctcacccctagcctcca 16520954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 3152129 - 3151713
Alignment:
Q  16 cacaaaccgcataatgtcacctttcaattccggccaaaagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcc 115  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||| ||||  |||||| ||||| ||||||||||||| || ||||| |||| |    
T  3152129 cacaaaccgcataatgtcacctttcaaatccggccaaaattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaattc 3152030  T
Q  116 cacactgccaccttaacttcagtctcattaaaatgataaatcaaactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcc 215  Q
    ||||| ||  ||||||||||||||||| ||||  |  |||| |    |||| ||| |  ||||||||||||   |||||  | |||||||||||||||||    
T  3152029 cacaccgcagccttaacttcagtctcagtaaacaggcaaataagggaattttcttccgcaacagataatcttttaaaatgtaaatcatccaccctaggcc 3151930  T
Q  216 tattaatgtcatgcgcctggtaaagattttgaaaatgactgaaaactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaaa 315  Q
    |||| ||| |||||||||| ||| | | ||| || ||||||||||||||| |||  ||||| ||||||||||||||| ||||||| ||||||||| || |    
T  3151929 tattcatgacatgcgcctgataatggtgttggaagtgactgaaaactgctgcccgaacttcggaaactccctccacatcatttccatcaactaaaataga 3151830  T
Q  316 agagagggcattttttcgacgttttcctgacataatagcatggaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccac 415  Q
     |||| ||  ||| ||| |||| | || |||||||| ||||| ||||||||||| ||||||||||||||| ||||||||| |  |  ||||||||||||     
T  3151829 tgagatggtgtttcttctacgtctgccggacataatggcatgaaaatatttagagtttgcatctccttcccgaagccatagtaatctcgattgttgccat 3151730  T
Q  416 gaaatactagcatttgc 432  Q
    |||||||| || |||||    
T  3151729 gaaatacttgcgtttgc 3151713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 521
Target Start/End: Complemental strand, 19307897 - 19307392
Alignment:
Q  16 cacaaaccgcataatgtcacctttcaattccggccaaaagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcc 115  Q
    ||||||||||||||| ||||||||||| ||| |||| ||||||||| |||||||||  ||||   | ||  ||||||| ||||| || ||||| ||||||    
T  19307897 cacaaaccgcataatatcacctttcaaatcctgccagaagtctttaataaaacccaaaggaacaccgtctggacccgggctcttgtaaccatcacaatcc 19307798  T
Q  116 cacactgccaccttaacttcagtctcattaaaatgataaatcaaactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcc 215  Q
    |||||||| ||||||||||| | |||  ||||  ||   |||| |  ||| |||| ||| || |||||    | |||||||||| |||||||||||||||    
T  19307797 cacactgctaccttaacttccgcctctgtaaacggacgtatcagagcattaccttccaacacggataaatgacgaaaattcataccatccaccctaggcc 19307698  T
Q  216 tattaat-gtcatgcgcctggtaaagattttgaaaatgactgaaaactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaa 314  Q
    |||| |  | ||  | |||| ||| |||  || |||||| | | ||||||| |||||||||| || || |||||||||| || ||||||||||||| ||     
T  19307697 tattcagaggcaa-cacctgataatgatgctggaaatgattaagaactgctgccctgacttcggatacaccctccacaatatgtccttcaactaaaatag 19307599  T
Q  315 aagagagggcattttttcgacgttttcctgacataatagcatggaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgcca 414  Q
    | |||| || ||||  ||||||| |  | |||||||| ||||| |||||||||||||| || ||||||||  ||||||||| |  | |||||||||||||    
T  19307598 aggagatggtatttcgtcgacgtctatcagacataattgcatgaaaatatttagaattcgcgtctccttctcgaagccatagtaatcgcgattgttgcca 19307499  T
Q  415 cgaaatactagcatttgccctggataaagaatgtaaatcagctgacatcgcatgtaaatccgccacttcctccacagacagttcgtccacctctccccta 514  Q
    ||| |||||||||||| ||||||| ||||||||||||||   ||||||  |||||||||||| ||  |||||| | ||||  |||| |||||| ||||||    
T  19307498 cgagatactagcatttaccctggacaaagaatgtaaatccattgacatatcatgtaaatccgtcaaatcctcctcggacaagtcgttcacctcaccccta 19307399  T
Q  515 gcctcca 521  Q
     ||||||    
T  19307398 tcctcca 19307392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 447
Target Start/End: Original strand, 32644029 - 32644132
Alignment:
Q  344 gacataatagcatggaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggataaag 443  Q
    |||||||| ||||| |||||||| ||||| ||||| |||||  ||||||||||||   | ||||||||||| ||||| || ||||| ||||| || ||||    
T  32644029 gacataatcgcatgaaaatattttgaattggcatccccttcacgaagccataatgaccgagattgttgccaagaaatgctcgcattagccctcgaaaaag 32644128  T
Q  444 aatg 447  Q
    ||||    
T  32644129 aatg 32644132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 447
Target Start/End: Complemental strand, 36190781 - 36190678
Alignment:
Q  344 gacataatagcatggaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggataaag 443  Q
    |||||||| ||||| |||||||| | ||| ||||| |||||  |||||||||||    | ||||||||||| ||||| ||||| || ||||| |||||||    
T  36190781 gacataatcgcatgaaaatattttgtattggcatccccttctcgaagccataataaacgagattgttgccaagaaatgctagcgttagccctcgataaag 36190682  T
Q  444 aatg 447  Q
    ||||    
T  36190681 aatg 36190678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 48436118 - 48436170
Alignment:
Q  341 cctgacataatagcatggaaatatttagaatttgcatctccttcctgaagcca 393  Q
    |||||||||||||||||  ||||||| | ||||||||| |||||| |||||||    
T  48436118 cctgacataatagcatgataatatttgggatttgcatccccttcccgaagcca 48436170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 14606398 - 14606342
Alignment:
Q  341 cctgacataatagcatggaaatatttagaatttgcatctccttcctgaagccataat 397  Q
    |||||||| |||||||| || ||||||||||||||||| | |||  |||||||||||    
T  14606398 cctgacatgatagcatgaaagtatttagaatttgcatcccattcgcgaagccataat 14606342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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