View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_17 (Length: 513)
Name: NF16592_high_17
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 494
Target Start/End: Original strand, 16757927 - 16758406
Alignment:
| Q |
15 |
atgaaccatacggagaaaagaggacaatgacgatggaatttagaaaatgcatcgactctgctaaatgaaatatgaggacacaaggtaataggttagttag |
114 |
Q |
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| T |
16757927 |
atgaacaatatggagaaaagaggacaatgacgatggaatttagaaaatacatcgactctgctaaatgaaatatgaggacacaaggtaataggttagttag |
16758026 |
T |
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| Q |
115 |
ttgattcatgaaagagtatgccaaaaattgatctagaacttggtttgccactgagtcatctgaacatcaatgcatcaaaggagaactcatacgagtatta |
214 |
Q |
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| T |
16758027 |
ttgattcatgcaagagtatgccaaaaattgatctagaacttggtttgccaccgagtcatctgaacatcaatgcatcaaaggagaactcatacgagtatta |
16758126 |
T |
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| Q |
215 |
ttgggttcccaagtcccacatggagtagtataagttgttcggttgagcgtgaacatgttaaatgtgccaataacaatgctatgatttggatgaaatggca |
314 |
Q |
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| T |
16758127 |
tggggttcccaagtcccacatggagtagtataagttgtttggttgagcattaacatgttaaatgtgccaataacaatgctatgatttggatgaaatggca |
16758226 |
T |
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| Q |
315 |
ttgtgttcacttatctattgaaggttttattctttatactttgtctcttattaagtttgcaatttacggtgctaaatctgctgtctcacacgtagtcctc |
414 |
Q |
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| T |
16758227 |
ctgtgttcacttgtctattgaaggttttattctttatactttgtctcttattaagtttgcaatttacggtgctaaatctgctgtctcacacgtagtcctc |
16758326 |
T |
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| Q |
415 |
agggagtttaagacatgcatccttcttctaggaaactattatctctttggatccaatctcagtacaaccagtatatgtgg |
494 |
Q |
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| T |
16758327 |
agggagtttaagacatgcatccttcatctaggaaactattatctctttggatcgaatctcagtacaaccagtatatgtgg |
16758406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 331 - 484
Target Start/End: Original strand, 16753409 - 16753562
Alignment:
| Q |
331 |
attgaaggttttattctttatactttgtctcttattaagtttgcaatttacggtgctaaatctgctgtctcacacgtagtcctcagggagtttaagacat |
430 |
Q |
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| T |
16753409 |
attgaacgttttattctttatactctgtctctcattgactttgcaatttagagcgctaaatctgctgtcttgcatgtagtcctcagggagtttaagacat |
16753508 |
T |
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| Q |
431 |
gcatccttcttctaggaaactattatctctttggatccaatctcagtacaacca |
484 |
Q |
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| T |
16753509 |
gcgttctgctttgaggaaactattatctctttggatccaatctcagtataacca |
16753562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 372 - 472
Target Start/End: Original strand, 16745350 - 16745450
Alignment:
| Q |
372 |
tgcaatttacggtgctaaatctgctgtctcacacgtagtcctcagggagtttaagacatgcatccttcttctaggaaactattatctctttggatccaat |
471 |
Q |
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| T |
16745350 |
tgcaatttacagtgctacatctgctgtttcgcacgttgtccttgggcagtttaagacatgcatcctgcttctaggaaactattttctctttggatctaat |
16745449 |
T |
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| Q |
472 |
c |
472 |
Q |
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| T |
16745450 |
c |
16745450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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