View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16592_high_18 (Length: 507)

Name: NF16592_high_18
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16592_high_18
NF16592_high_18
[»] chr4 (18 HSPs)
chr4 (17-492)||(5612836-5613311)
chr4 (17-492)||(5848481-5848956)
chr4 (17-492)||(5604721-5605193)
chr4 (16-492)||(5886700-5887173)
chr4 (17-492)||(5895545-5896017)
chr4 (25-418)||(5857379-5857769)
chr4 (17-355)||(3748220-3748558)
chr4 (246-490)||(5558473-5558714)
chr4 (266-492)||(5539760-5539986)
chr4 (221-492)||(5571623-5571894)
chr4 (27-119)||(5558248-5558340)
chr4 (17-121)||(5571997-5572101)
chr4 (246-352)||(5564261-5564367)
chr4 (17-90)||(5540165-5540238)
chr4 (221-357)||(252970-253106)
chr4 (83-151)||(5552509-5552577)
chr4 (375-419)||(5583903-5583947)
chr4 (17-121)||(5584204-5584308)
[»] chr8 (1 HSPs)
chr8 (246-358)||(1482686-1482798)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 492
Target Start/End: Original strand, 5612836 - 5613311
Alignment:
Q  17 tgaagcattgcaaagggaatcaggaatgcttccttgtaaactattatttgaaagtgatagaaaatttgtggaagataggaaattaccaatatcatgtggg 116  Q
    |||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||   ||  ||||| ||| |||||||||||||||| |||    
T  5612836 tgaagctttgcagagggaatgagggatgcttccttgtaaactattatttgaaagagatagaaaccatgcagaagacaggtaattaccaatatcatgcggg 5612935  T
Q  117 ataactgagaaattgttggttgagtaatccaaatatccgatagattcaggtaaaataggtattgatccttgaatttggttgttgtgaaggtcaataagat 216  Q
    ||||| ||||| |||||||||||||||||||||||||  ||||||||||  |||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  5612936 ataacagagaatttgttggttgagtaatccaaatatctaatagattcagaaaaaacaggtattgttccttgaatttggttgttatgaaggtcaataagat 5613035  T
Q  217 aaaggttggaagtaaaattttgcatagaaccttccaattctgtgagaaaattgtgagaaataataagccgttgaagactttgtagtttccaaatccaatt 316  Q
     |||||||||||||| |||||||| | |||||||||| ||||||||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||||    
T  5613036 gaaggttggaagtaatattttgcaaacaaccttccaactctgtgagaaaattgtgtgaaatattaagctgttcaagactttgtagtttccaaatccaatt 5613135  T
Q  317 gggcagaactccttgaatttggttagctgaaaggtctagaaattccaatgttgattgatttctcaagaatatagggaaagtttgcaagttgcaggatgcc 416  Q
     |||| |||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  5613136 tggcacaactccttgaatttggttggctgaaaggtctagattttccaatgttgattgatttctcaagaatataggaaaagttttcaggttgcaggatgcc 5613235  T
Q  417 aaagatagactatt-aaaattgggaaaggaaatctgatcaacatttgcatcattctcattgattgatatgttgttgt 492  Q
    |||   ||| |||| |||||||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||||    
T  5613236 aaatgaaga-tattcaaaattgggaaaggcagtctgatcagcatttgcatcattctcatttattgatatgttgttgt 5613311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 492
Target Start/End: Complemental strand, 5848956 - 5848481
Alignment:
Q  17 tgaagcattgcaaagggaatcaggaatgcttccttgtaaactattatttgaaagtgatagaaaatttgtggaagataggaaattaccaatatcatgtggg 116  Q
    |||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||||||||||||||||    
T  5848956 tgaagctttgcagagggaatgagggatgcttccttgtaaactattatttgaaagagatagaaaatttgtggaagacagataattaccaatatcatgtggg 5848857  T
Q  117 ataactgagaaattgttggttgagtaatccaaatatccgatagattcaggtaaaataggtattgatccttgaatttggttgttgtgaaggtcaataagat 216  Q
    ||| | ||||||||||||||||||||||||||  || | ||||||||||| |||| || || ||||||||| | ||||||||| ||||||||||| | |     
T  5848856 ataccagagaaattgttggttgagtaatccaagcattcaatagattcaggaaaaacagatactgatccttgtagttggttgttatgaaggtcaattaaaa 5848757  T
Q  217 aaaggttggaagtaaaattttgcatagaaccttccaattctgtgagaaaattgtgagaaataataagccgttgaagactttgtagtttccaaatccaatt 316  Q
     |||||||||||||| |||||||| |||||||||||||||||||||||||||||  ||||||  |||  ||  |||||||| ||||||||||||||||||    
T  5848756 taaggttggaagtaatattttgcaaagaaccttccaattctgtgagaaaattgtatgaaatatcaagtagtgaaagactttttagtttccaaatccaatt 5848657  T
Q  317 gggcagaactccttgaatttggttagctgaaaggtctagaaattccaatgttgattgatttctcaagaatatagggaaagtttgcaagttgcaggatgcc 416  Q
    ||| |  |||||||||||||||||||||||||||| |||| || ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||    
T  5848656 gggtaccactccttgaatttggttagctgaaaggtttagatatcccaatgttgattgatttttcaggaatctagggaaagtttgcaagttgcaggatgcc 5848557  T
Q  417 aaagatagactattaaaattgggaaaggaaatctgatcaacatttgcatcattctcattgattgatatgttgttgt 492  Q
    ||| ||||  | |  |  ||||||||||   ||||||||||| |||||||||||||| ||||||||||||||||||    
T  5848556 aaatatagtgtttgtagcttgggaaaggctgtctgatcaacacttgcatcattctcaatgattgatatgttgttgt 5848481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 17 - 492
Target Start/End: Original strand, 5604721 - 5605193
Alignment:
Q  17 tgaagcattgcaaagggaatcaggaatgcttccttgtaaactattatttgaaagtgatagaaaatttgtggaagataggaaattaccaatatcatgtggg 116  Q
    |||||| ||||| ||||||| ||| ||||||||||||||| ||||||||||||| |||| ||||  ||  ||||| ||| |||| |||||||||||||||    
T  5604721 tgaagctttgcagagggaatgagggatgcttccttgtaaattattatttgaaagagatataaaaaatgcagaagaaaggtaattgccaatatcatgtggg 5604820  T
Q  117 ataactgagaaattgttggttgagtaatccaaatatccgatagattcaggtaaaataggtattgatccttgaatttggttgttgtgaaggtcaataagat 216  Q
    ||||| || |||||||| ||||||||||||||| |||| ||||||||||| |||| ||||||  ||||||| | ||||||||| |||||||| |  |       
T  5604821 ataacagaaaaattgtttgttgagtaatccaaaaatccaatagattcaggaaaaacaggtatgcatccttgtagttggttgttatgaaggtctactaccc 5604920  T
Q  217 aaaggttggaagtaaaattttgcatagaaccttccaattctgtgagaaaattgtgagaaataataagccgttgaagactttgtagtttccaaatccaatt 316  Q
    |||   ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  5604921 aaa---tggaagtaagattttgcaaagaaccttccaattctgtgagaaaattgtgtgaaatattaagccattgaagactttgtagtttccaaatccaatt 5605017  T
Q  317 gggcagaactccttgaatttggttagctgaaaggtctagaaattccaatgttgattgatttctcaagaatatagggaaagtttgcaagttgcaggatgcc 416  Q
     ||||  ||||||||||| | |||| |||||||||||||| ||  |||||||||||||||  |||||||| |||||||| |||| | |||||||||||||    
T  5605018 cggcactactccttgaatgttgttatctgaaaggtctagagatatcaatgttgattgattcatcaagaatctagggaaactttgtatgttgcaggatgcc 5605117  T
Q  417 aaagatagactattaaaattgggaaaggaaatctgatcaacatttgcatcattctcattgattgatatgttgttgt 492  Q
    ||| ||| |   || | ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  5605118 aaatataaaagttttatattgggaaaggaaatctgatcaacatttgcatcattcccattgattgacatgttgttgt 5605193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 492
Target Start/End: Complemental strand, 5887173 - 5886700
Alignment:
Q  16 atgaagcattgcaaagggaatcaggaatgcttccttgtaaactattatttgaaagtgatagaaaatttgtggaagataggaaattaccaatatcatgtgg 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| | |||| |||| ||| |||||||||||||||| ||    
T  5887173 atgaagcattgcaaagggaatcagggatgcttccttgtaaactattattagaaagagatagaaactgtgtgtaagacaggtaattaccaatatcatgcgg 5887074  T
Q  116 gataactgagaaattgttggttgagtaatccaaatatccgatagattcaggtaaaataggtattgatccttgaatttggttgttgtgaaggtcaataaga 215  Q
    |||||| ||||| |||||||| ||||||||||||||| | | | ||||| | |||| ||||||   ||||||||| |||||||| ||||||||||||       
T  5887073 gataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtat---tccttgaatgtggttgttatgaaggtcaatatat 5886977  T
Q  216 taaaggttggaagtaaaattttgcatagaaccttccaattctgtgagaaaattgtgagaaataataagccgttgaagactttgtagtttccaaatccaat 315  Q
     |||||||||||| || |||||||  ||| ||||||| |||||||||||||||||| |||||| ||||   |||||||  ||||||| || ||||||| |    
T  5886976 aaaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagt 5886877  T
Q  316 tgggcagaactccttgaatttggttagctgaaaggtctagaaattccaatgttgattgatttctcaagaatatagggaaagtttgcaagttgcaggatgc 415  Q
    ||||||||||||||||||||||||||  ||| |||||||||      |||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  5886876 tgggcagaactccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgc 5886777  T
Q  416 caaagatagactattaaaattgggaaaggaaatctgatcaacatttgcatcattctcattgattgatatgttgttgt 492  Q
    |||| | ||||  | ||||||||||||||   |||||||| ||||||||||||||||| ||||||||||||||||||    
T  5886776 caaaaaaagacgttcaaaattgggaaaggttgtctgatcagcatttgcatcattctcaatgattgatatgttgttgt 5886700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 492
Target Start/End: Complemental strand, 5896017 - 5895545
Alignment:
Q  17 tgaagcattgcaaagggaatcaggaatgcttccttgtaaactattatttgaaagtgatagaaaatttgtggaagataggaaattaccaatatcatgtggg 116  Q
    |||||| ||| | ||||||| ||| ||| |||| |||||| ||||||||||||| |||||| |   | ||||||| | | ||||||||||||||||||||    
T  5896017 tgaagctttgaagagggaatgagggatggttccatgtaaattattatttgaaagagatagatacaatatggaagacaagtaattaccaatatcatgtggg 5895918  T
Q  117 ataactgagaaattgttggttgagtaatccaaatatccgatagattcaggtaaaataggtattgatccttgaatttggttgttgtgaaggtcaataagat 216  Q
    ||||| ||||| || ||||||||||||||||||||    ||| ||||||| |||| |||||||| |||||||||||||||||| |||||||| |  |       
T  5895917 ataacagagaatttattggttgagtaatccaaatactgaataaattcaggaaaaacaggtattgttccttgaatttggttgttatgaaggtctaataccc 5895818  T
Q  217 aaaggttggaagtaaaattttgcatagaaccttccaattctgtgagaaaattgtgagaaataataagccgttgaagactttgtagtttccaaatccaatt 316  Q
    |||   ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||  |||||||||| ||||||||||||||||||||    
T  5895817 aaa---tggaagtaagattttgcaaagaaccttccaattctgtgagaaaattgtgtgaaatattaagttgttgaagactctgtagtttccaaatccaatt 5895721  T
Q  317 gggcagaactccttgaatttggttagctgaaaggtctagaaattccaatgttgattgatttctcaagaatatagggaaagtttgcaagttgcaggatgcc 416  Q
    |||||   |||||||||||||||||  ||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||| ||||||||||||||      
T  5895720 gggcactgctccttgaatttggttatgtgaaaggtctagagatagcaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgat 5895621  T
Q  417 aaagatagactattaaaattgggaaaggaaatctgatcaacatttgcatcattctcattgattgatatgttgttgt 492  Q
    ||| | |||   | |||||||||||||| | |||| ||| ||||||||||||||||||| ||||||||||||||||    
T  5895620 aaataaagaagttcaaaattgggaaaggcagtctggtcagcatttgcatcattctcatttattgatatgttgttgt 5895545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 25 - 418
Target Start/End: Original strand, 5857379 - 5857769
Alignment:
Q  25 tgcaaagggaatcaggaatgcttccttgtaaactattatttgaaagtgatagaaaatttgtggaagataggaaattaccaatatcatgtgggataactga 124  Q
    |||| ||||||| ||| ||| ||||||||||| ||||||||||||| |||||||| ||||||||||| ||| |||| |||||||| |||| |||||||||    
T  5857379 tgcagagggaatgagggatgtttccttgtaaattattatttgaaagagatagaaactttgtggaagacaggtaattgccaatatcttgtgagataactga 5857478  T
Q  125 gaaattgttggttgagtaatccaaat-atccgatagattcaggtaaaataggtattgatccttgaatttggttgttgtgaaggtcaataagataaaggtt 223  Q
     || ||||| |||||||||||||||| ||| || ||||| ||  ||||  |||||||| || |||| ||||||||| |||||||| |  |   |||   |    
T  5857479 aaatttgtttgttgagtaatccaaataatcaga-agatttagaaaaaactggtattgacccctgaagttggttgttatgaaggtctaatatccaaa---t 5857574  T
Q  224 ggaagtaaaattttgcatagaaccttccaattctgtgagaaaattgtgagaaataataagccgttgaagactttgtagtttccaaatccaattgggcaga 323  Q
    |||||||| |||||||||||  |||||||| ||  | | | |||||||||||||| ||||   |||||||  | ||||||||||||||||||| || |      
T  5857575 ggaagtaagattttgcataggtccttccaagtcgataaaagaattgtgagaaatattaaggacttgaagatatggtagtttccaaatccaatttggtact 5857674  T
Q  324 actccttgaatttggttagctgaaaggtctagaaattccaatgttgattgatttctcaagaatatagggaaagtttgcaagttgcaggatgccaa 418  Q
    | ||| ||||| |||||| |||||||||||||||    |||| | ||||| ||| |||||||  |||||| ||||| ||||||||||||||||||    
T  5857675 attccatgaatctggttatctgaaaggtctagaatggtcaatctggattggtttatcaagaaactagggatagttttcaagttgcaggatgccaa 5857769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 3748220 - 3748558
Alignment:
Q  17 tgaagcattgcaaagggaatcaggaatgcttccttgtaaactattatttgaaagtgatagaaaatttgtggaagataggaaattaccaatatcatgtggg 116  Q
    |||||||||||| |  |||||||| |||||||| ||||||||||| || ||||  || ||||||| ||||||||||||| ||||||||||||| | ||||    
T  3748220 tgaagcattgcataaagaatcagggatgcttccatgtaaactattgttggaaaaagagagaaaatatgtggaagataggtaattaccaatatcttctggg 3748319  T
Q  117 ataactgagaaattgttggttgagtaatccaaatatccgatagattcaggtaaaataggtattgatccttgaatttggttgttgtgaaggtcaataagat 216  Q
    ||||| || || |||||||| ||||||||||||||| | | ||||| | | |||| |||||||| |||||| | || |||||| |||||||||| ||  |    
T  3748320 ataacagaaaatttgttggtagagtaatccaaatattcaacagatttaagaaaaaaaggtattggtccttgcagtttgttgttatgaaggtcaagaattt 3748419  T
Q  217 aaaggttggaagtaaaattttgcatagaaccttccaattctgtgagaaaattgtgagaaataataagccgttgaagactttgtagtttccaaatccaatt 316  Q
        || |||||| | |||||||| ||  |||||||| |  ||||||| ||||||||||||| ||||   ||  |||  | | |||||||||| ||||||    
T  3748420 cccagtaggaagtgagattttgcaaaggtccttccaaatgagtgagaagattgtgagaaatattaagagcttctagatatggcagtttccaaacccaatt 3748519  T
Q  317 gggcagaactccttgaatttggttagctgaaaggtctag 355  Q
     || |  | ||||||||| |||||| |||||||||||||    
T  3748520 tggtactattccttgaatctggttatctgaaaggtctag 3748558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 246 - 490
Target Start/End: Original strand, 5558473 - 5558714
Alignment:
Q  246 ccttccaattctgtgagaaaattgtgagaaataataagccgttgaagactttgtagtttccaaatccaattgggcagaactccttgaatttggttagctg 345  Q
    ||||||||||| ||||||||||||||||||||| | ||| ||| |||||||   ||| ||||||||||||||||||  ||||| ||||||||||||||||    
T  5558473 ccttccaattcagtgagaaaattgtgagaaatattcagctgttcaagactt---agtgtccaaatccaattgggcactactccgtgaatttggttagctg 5558569  T
Q  346 aaaggtctagaaattccaatgttgattgatttctcaagaatatagggaaagtttgcaagttgcaggatgccaaagatagactattaaaattgggaaagga 445  Q
    |||||||||||      ||  | ||||| ||  |||||||  |||||||||||| ||||||||||| ||||||   |||||   |||| ||||||||| |    
T  5558570 aaaggtctagatggaataacatggattggttcatcaagaaattagggaaagttttcaagttgcaggttgccaattctagacgtgtaaatttgggaaagaa 5558669  T
Q  446 aatctgatcaacatttgcatcattctcattgattgatatgttgtt 490  Q
    | | |||||||||||||||||| |  |||||||||||||||||||    
T  5558670 agtatgatcaacatttgcatcacttacattgattgatatgttgtt 5558714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 266 - 492
Target Start/End: Complemental strand, 5539986 - 5539760
Alignment:
Q  266 attgtgagaaataataagccgttgaagactttgtagtttccaaatccaattgggcagaactccttgaatttggttagctgaaaggtctagaaattccaat 365  Q
    ||||||||||| | ||||   ||||||| ||||||| ||||| ||||| |||||||    ||| |||||||| |||  ||||||||||||||  | ||||    
T  5539986 attgtgagaaacattaaggttttgaagattttgtagcttccatatccagttgggcactgttccatgaatttgattatttgaaaggtctagaatgttcaat 5539887  T
Q  366 gttgattgatttctcaagaatatagggaaagtttgcaagttgcaggatgccaaagatagactattaaaattgggaaaggaaatctgatcaacatttgcat 465  Q
     | ||||  |||||||||||  |||||||||||| || |||||||||||||||   |||| || ||| ||||| ||||||| | |||||| ||||| ||     
T  5539886 ctggatttgtttctcaagaaactagggaaagttttcaggttgcaggatgccaacattagagtactaatattggaaaaggaagtatgatcagcattttcaa 5539787  T
Q  466 cattctcattgattgatatgttgttgt 492  Q
    ||||| |||||||||||||||||||||    
T  5539786 cattcacattgattgatatgttgttgt 5539760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 221 - 492
Target Start/End: Complemental strand, 5571894 - 5571623
Alignment:
Q  221 gttggaagtaaaattttgcatagaaccttccaattctgtgagaaaattgtgagaaataataagccgttgaagactttgtagtttccaaatccaattgggc 320  Q
    ||||||||| |  ||||||| ||  |||||||| || ||||| | ||| ||||||| | |||| | ||||||| |||| |   |||||||||| |||||     
T  5571894 gttggaagtgaggttttgcagagggccttccaaatcagtgagcatattatgagaaacattaaggctttgaagattttgaatcctccaaatccagttggga 5571795  T
Q  321 agaactccttgaatttggttagctgaaaggtctagaaattccaatgttgattgatttctcaagaatatagggaaagtttgcaagttgcaggatgccaaag 420  Q
    |  | ||||||||| || |||  ||| ||||||||||    |||| | ||||  |||||||||||  |||||||||||| || |||||||||||||||      
T  5571794 actattccttgaatctgattatgtgagaggtctagaatgctcaatctggatttgtttctcaagaaactagggaaagttttcaggttgcaggatgccaact 5571695  T
Q  421 atagactattaaaattgggaaaggaaatctgatcaacatttgcatcattctcattgattgatatgttgttgt 492  Q
     || | || ||| ||||| ||| ||| | |||||| ||||| || ||||| |||||||||||||||||||||    
T  5571694 ttaaagtactaatattggaaaacgaagtatgatcagcattttcaacattcacattgattgatatgttgttgt 5571623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 5558248 - 5558340
Alignment:
Q  27 caaagggaatcaggaatgcttccttgtaaactattatttgaaagtgatagaaaatttgtggaagataggaaattaccaatatcatgtgggata 119  Q
    ||||||||||| || |||||||| |||||| |||| | |||||| || |||||||  |||||||| |   ||||||||||||| |||||||||    
T  5558248 caaagggaatcggggatgcttccctgtaaattattttgtgaaagagagagaaaataagtggaagacaaataattaccaatatcttgtgggata 5558340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 5572101 - 5571997
Alignment:
Q  17 tgaagcattgcaaagggaatcaggaatgcttccttgtaaactattatttgaaagtgatagaaaatttgtggaagataggaaattaccaatatcatgtggg 116  Q
    |||||||||||| ||||| | ||| ||  |||| |||||| ||||||||||||  || |||||| ||||| |||| ||| | ||||| ||||| ||||||    
T  5572101 tgaagcattgcagagggattgagggatagttccatgtaaagtattatttgaaaaagagagaaaagttgtgaaagacaggtagttaccgatatcttgtggg 5572002  T
Q  117 ataac 121  Q
    |||||    
T  5572001 ataac 5571997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 352
Target Start/End: Original strand, 5564261 - 5564367
Alignment:
Q  246 ccttccaattctgtgagaaaattgtgagaaataataagccgttgaagactttgtagtttccaaatccaattgggcagaactccttgaatttggttagctg 345  Q
    |||||||| || ||||||||||||||||||||| ||||   || ||| | ||| | ||||||||||||||| || |  | ||||||||| ||||||  ||    
T  5564261 ccttccaaatcagtgagaaaattgtgagaaatattaaggatttcaagcccttgcattttccaaatccaatttggtactattccttgaatctggttatttg 5564360  T
Q  346 aaaggtc 352  Q
    |||||||    
T  5564361 aaaggtc 5564367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 5540238 - 5540165
Alignment:
Q  17 tgaagcattgcaaagggaatcaggaatgcttccttgtaaactattatttgaaagtgatagaaaatttgtggaag 90  Q
    |||||||||||| ||||||| ||| || || ||||||||| |||||||||| || || |||||| ||||| |||    
T  5540238 tgaagcattgcagagggaatgagggatactgccttgtaaagtattatttgagagcgagagaaaagttgtgaaag 5540165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 357
Target Start/End: Complemental strand, 253106 - 252970
Alignment:
Q  221 gttggaagtaaaattttgcatagaaccttccaattctgtgagaaaattgtgagaaataataagccgttgaagactttgtagtttccaaatccaattgggc 320  Q
    |||||| |||| |||||||| ||  |||| ||| |  ||||||||||||||||| ||| |||| | |  |||| ||||||||||||||| ||| |||||     
T  253106 gttggatgtaagattttgcaaaggtccttacaaattagtgagaaaattgtgagagatattaaggcttccaagattttgtagtttccaaacccagttggga 253007  T
Q  321 agaactccttgaatttggttagctgaaaggtctagaa 357  Q
    |  | ||||||||| | ||||  |||||| |||||||    
T  253006 actattccttgaatctcgttatgtgaaagatctagaa 252970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 5552509 - 5552577
Alignment:
Q  83 tgtggaagataggaaattaccaatatcatgtgggataactgagaaattgttggttgagtaatccaaata 151  Q
    ||||||||| | | ||||||||||||| ||||| |||   || |||||||| |||||||||||||||||    
T  5552509 tgtggaagacaagtaattaccaatatcttgtggaatactagaaaaattgtttgttgagtaatccaaata 5552577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 5583947 - 5583903
Alignment:
Q  375 tttctcaagaatatagggaaagtttgcaagttgcaggatgccaaa 419  Q
    |||||||||||  |||||||||||| || ||||||||||||||||    
T  5583947 tttctcaagaaactagggaaagttttcaggttgcaggatgccaaa 5583903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 5584308 - 5584204
Alignment:
Q  17 tgaagcattgcaaagggaatcaggaatgcttccttgtaaactattatttgaaagtgatagaaaatttgtggaagataggaaattaccaatatcatgtggg 116  Q
    |||||||||||| |||||   ||| ||  |||| |||||| ||||||||||||  || |||||| ||||| |||| ||| | ||||| ||||| ||||||    
T  5584308 tgaagcattgcagagggatcgagggatagttccatgtaaagtattatttgaaaaagagagaaaagttgtgaaagacaggtagttaccgatatcttgtggg 5584209  T
Q  117 ataac 121  Q
    |||||    
T  5584208 ataac 5584204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 1482686 - 1482798
Alignment:
Q  246 ccttccaattctgtgagaaaattgtgagaaataataagccgttgaagactttgtagtttccaaatccaattgggcagaactccttgaatttggttagctg 345  Q
    |||||||||||||||||||||||||| |||||| ||||    |||| ||||| |||||||||||||||||| || ||  ||||||||||||||||  |||    
T  1482686 ccttccaattctgtgagaaaattgtgtgaaatattaagttcctgaatactttctagtttccaaatccaattaggaagtgctccttgaatttggttctctg 1482785  T
Q  346 aaaggtctagaaa 358  Q
    |||||||||||||    
T  1482786 aaaggtctagaaa 1482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University