View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_21 (Length: 484)
Name: NF16592_high_21
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 14 - 459
Target Start/End: Complemental strand, 31033598 - 31033153
Alignment:
| Q |
14 |
cataggcacaacttccatcatgtaacaacccacactgcgcaggaatgggcagaaacttttgttaggtatactatttgtagtctcaatatcttctcttata |
113 |
Q |
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| T |
31033598 |
cataggcacaacttccatcatgtaacaacccacactgcgcaggaatgggcagaaacttttgttaggtatactatttgtagtctcaatatcttctcttata |
31033499 |
T |
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| Q |
114 |
tattcaaagtttgtggtttacaatgagggtggtgtatcttatcagggtctgttaactttgtacataatgattcataacttggtttgcagttaagactttg |
213 |
Q |
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| T |
31033498 |
tattcaaagtttgtggtttacaatgagggtggtgtatcttatcagggtctgttaactttgtacataatgattcataacttgctctgcagttaagactttg |
31033399 |
T |
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| Q |
214 |
aactgtaattctggaggcttttttaaaatgttactgttagttatacgcttgatttgcctaattaattaatgtcgtctccttggttgtatcttaaggcttc |
313 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31033398 |
aactgtaactctggaggcttttttaaaatgttactgttagttatatgcttgatttgcctaattaattaaagtcgtctccttggttgtatcttaaggcttc |
31033299 |
T |
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| Q |
314 |
tgttgttttgggtaaattctgtaaaagtacacagatagcattttagttcaatatgatgcttatttacttgtatcgttgtaggtttaggaataaaagaaag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31033298 |
tgttgttttgggtaaattctgtaaaagtacacagatagcattttagttcaatatgatgcttatttacttgtatcgttgtaggtttaggaataaaagaaag |
31033199 |
T |
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| Q |
414 |
tcatgcagatttacgattttaactatgcactgaagtatgatatgaa |
459 |
Q |
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| T |
31033198 |
tcatgcagatttacgattttaactatgcactgaagtatgatatgaa |
31033153 |
T |
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