View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16592_high_24 (Length: 473)

Name: NF16592_high_24
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16592_high_24
NF16592_high_24
[»] chr4 (12 HSPs)
chr4 (239-454)||(48899792-48900007)
chr4 (110-209)||(45346766-45346864)
chr4 (120-209)||(45342301-45342390)
chr4 (110-233)||(48872669-48872791)
chr4 (110-233)||(48877973-48878095)
chr4 (120-233)||(45364060-45364174)
chr4 (120-233)||(45375300-45375414)
chr4 (120-233)||(45382879-45382993)
chr4 (327-405)||(48865432-48865512)
chr4 (307-405)||(48872485-48872585)
chr4 (307-405)||(48877789-48877889)
chr4 (129-197)||(48865646-48865714)
[»] chr3 (5 HSPs)
chr3 (102-346)||(11014009-11014258)
chr3 (75-236)||(11023295-11023455)
chr3 (313-408)||(11014261-11014358)
chr3 (298-346)||(11004677-11004725)
chr3 (313-368)||(11023531-11023586)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 239 - 454
Target Start/End: Complemental strand, 48900007 - 48899792
Alignment:
Q  239 gaacccctggaacaacagaaaataatcgacaatacacaacaagaatcaaactcaaaactacttgatcaaagcccgtgatactacttcatgaacaaactat 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48900007 gaacccctggaacaacagaaaataatcgacaatacacaacaagaatcaaactcaaaactacttgatcaaagcccgtgatactacttcatgaacaaactat 48899908  T
Q  339 tccaaaagtttaagctattcagtaaagacaaagtatttttcaatattgtatatgtgaactctatcaccaactcaatggtaatatggttcatttaatactt 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48899907 tccaaaagtttaagctattcagtaaagacaaagtatttttcaatattgtatatatgaactctatcaccaactcaatggtaatatggttcatttaatactt 48899808  T
Q  439 aaatgttttccttttt 454  Q
    ||||||||||||||||    
T  48899807 aaatgttttccttttt 48899792  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 110 - 209
Target Start/End: Original strand, 45346766 - 45346864
Alignment:
Q  110 attgtctatgttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagccattttaggtgggaaacac 209  Q
    ||||||||| |||||||| ||||||||  |||||||||||||||| ||||||||| ||||||||||| |||| || ||||| ||| ||||||| ||||||    
T  45346766 attgtctat-ttttttagctgtccaagcgaactcagctcagatgagctttgtcgtgaatcatcaattcaaaaagcttgagctattgtaggtggaaaacac 45346864  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 45342301 - 45342390
Alignment:
Q  120 ttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagccattttaggtgggaaacac 209  Q
    |||||||| ||||||||  |||||||||||||||| ||||||||| ||||||||||| |||| || ||||| ||| ||||||| ||||||    
T  45342301 ttttttagctgtccaagcgaactcagctcagatgagctttgtcgtgaatcatcaattcaaaaagcttgagctattgtaggtggaaaacac 45342390  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 48872791 - 48872669
Alignment:
Q  110 attgtctatgttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagccattttaggtgggaaacac 209  Q
    |||||||| ||||||||| |||| ||| ||| |||||||| |||||||| ||||| ||||||| ||| |||| |  ||||  ||||||||||| ||||||    
T  48872791 attgtcta-gttttttagctgtcaaagcaaaatcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgagttattttaggtggaaaacac 48872693  T
Q  210 attaacaatttgtatattatatct 233  Q
    || || | ||| ||||||||||||    
T  48872692 atgaaaagtttttatattatatct 48872669  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 48878095 - 48877973
Alignment:
Q  110 attgtctatgttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagccattttaggtgggaaacac 209  Q
    |||||||| ||||||||| |||| ||| ||| |||||||| |||||||| ||||| ||||||| ||| |||| |  ||||  ||||||||||| ||||||    
T  48878095 attgtcta-gttttttagctgtcaaagcaaaatcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgagttattttaggtggaaaacac 48877997  T
Q  210 attaacaatttgtatattatatct 233  Q
    || || | ||| ||||||||||||    
T  48877996 atgaaaagtttttatattatatct 48877973  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 233
Target Start/End: Original strand, 45364060 - 45364174
Alignment:
Q  120 ttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagcca-ttttaggtgggaaacacattaacaat 218  Q
    |||||||| |||| ||| ||||||| | ||||||||||||||| | ||||||||||| |||| || ||||| | || ||||| | ||||| || |||| |    
T  45364060 ttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagt 45364159  T
Q  219 ttgtatattatatct 233  Q
    || ||||||||||||    
T  45364160 ttttatattatatct 45364174  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 233
Target Start/End: Original strand, 45375300 - 45375414
Alignment:
Q  120 ttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagcca-ttttaggtgggaaacacattaacaat 218  Q
    |||||||| |||| ||| ||||||| | ||||||||||||||| | ||||||||||| |||| || ||||| | || ||||| | ||||| || |||| |    
T  45375300 ttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagt 45375399  T
Q  219 ttgtatattatatct 233  Q
    || ||||||||||||    
T  45375400 ttttatattatatct 45375414  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 233
Target Start/End: Original strand, 45382879 - 45382993
Alignment:
Q  120 ttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagcca-ttttaggtgggaaacacattaacaat 218  Q
    |||||||| |||| ||| ||||||| | ||||||||||||||| | ||||||||||| |||| || ||||| | || ||||| | ||||| || |||| |    
T  45382879 ttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagt 45382978  T
Q  219 ttgtatattatatct 233  Q
    || ||||||||||||    
T  45382979 ttttatattatatct 45382993  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 405
Target Start/End: Complemental strand, 48865512 - 48865432
Alignment:
Q  327 tgaacaaactattccaaaagtttaagctattcagtaaagaca--aagtatttttcaatattgtatatgtgaactctatcac 405  Q
    |||||||| ||| ||||||||||||||||||  || ||||||  || | |||||||||||||||||  |||||||||||||    
T  48865512 tgaacaaattatgccaaaagtttaagctattatgtgaagacataaattgtttttcaatattgtataaatgaactctatcac 48865432  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 405
Target Start/End: Complemental strand, 48872585 - 48872485
Alignment:
Q  307 aagcccgtgatactacttcatgaacaaactattccaaaagtttaagctattcagtaaagac--aaagtatttttcaatattgtatatgtgaactctatca 404  Q
    ||||||||||||| | ||  |||||||||||| |||||||||||||||| | | | |||||  ||| | |||||||||||||||||  |||||| |||||    
T  48872585 aagcccgtgataccattttgtgaacaaactatgccaaaagtttaagctaataattgaagacataaattgtttttcaatattgtataaatgaactttatca 48872486  T
Q  405 c 405  Q
    |    
T  48872485 c 48872485  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 405
Target Start/End: Complemental strand, 48877889 - 48877789
Alignment:
Q  307 aagcccgtgatactacttcatgaacaaactattccaaaagtttaagctattcagtaaagac--aaagtatttttcaatattgtatatgtgaactctatca 404  Q
    ||||||||||||| | ||  |||||||||||| |||||||||||||||| | | | |||||  ||| | |||||||||||||||||  |||||| |||||    
T  48877889 aagcccgtgataccattttgtgaacaaactatgccaaaagtttaagctaataattgaagacataaattgtttttcaatattgtataaatgaactttatca 48877790  T
Q  405 c 405  Q
    |    
T  48877789 c 48877789  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 48865714 - 48865646
Alignment:
Q  129 tgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagccatttta 197  Q
    |||||||  |||||||||| |||||||||||||||| ||| ||| ||| |||| || ||||| ||||||    
T  48865714 tgtccaaacaaactcagcttagatgaactttgtcgtgaatgatccattcaaaaagcttgagctatttta 48865646  T

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Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 102 - 346
Target Start/End: Original strand, 11014009 - 11014258
Alignment:
Q  102 ttagttgcattgtctatgttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagccattttaggtg 201  Q
    ||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||    ||||||||||| |||| || | ||| ||||||||||    
T  11014009 ttagttgaattgtgtat-ttttttagatgtccaagcaaactcagctcagatgaactttgttaggaatcatcaattcaaaaagcttaagctattttaggtg 11014107  T
Q  202 ggaaacacattaacaatttgtatattatatcttt-acggaacccc-tggaacaacag----aaaataatcgacaatacacaacaagaatcaaactcaaaa 295  Q
    | ||| |||| || | ||| ||||| |||||||| ||  |||||| || ||| ||||      || ||| ||| |||||||||||||| ||||||| | |    
T  11014108 gaaaatacatgaatagtttttatatcatatctttaacataaccccttgaaactacagctcttgaagaatggactatacacaacaagaaccaaactctaca 11014207  T
Q  296 ctacttgatcaaagcccgtgatactacttcatgaacaaactattccaaaag 346  Q
    | |||||||||||||| ||||||| | |||||||||||||||| |||||||    
T  11014208 ccacttgatcaaagcctgtgataccatttcatgaacaaactatgccaaaag 11014258  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 11023295 - 11023455
Alignment:
Q  75 tttcccacactcccaagctcaccttccttagttgcattgtctatgttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaa 174  Q
    |||||||||||| |||| |||||  | || |||| |||||  || ||||||||||||  ||| |||||||||||||||||||||||| || |||||||||    
T  11023295 tttcccacactctcaagttcaccacctttggttgaattgtgaat-ttttttagatgttaaagcaaactcagctcagatgaactttgttgtgaatcatcaa 11023393  T
Q  175 ttaaaaaggcatgagccattttaggtgggaaacacattaacaatttgtatattatatcttta 236  Q
    ||  ||| || | ||| ||||||||||| ||  |||| || | ||| ||||| |||||||||    
T  11023394 ttccaaaagctttagctattttaggtggaaagtacatgaatagtttttatatcatatcttta 11023455  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 408
Target Start/End: Original strand, 11014261 - 11014358
Alignment:
Q  313 gtgatactacttcatgaacaaactattccaaaagtttaagctattcagtaaagac--aaagtatttttcaatattgtatatgtgaactctatcaccaa 408  Q
    ||||||| | ||||| |||||||||| | | |||||||||||||| ||| |||||  |||  ||||||||||||||||||  |||||| |||||||||    
T  11014261 gtgataccatttcatcaacaaactatgctacaagtttaagctattaagtgaagacataaataatttttcaatattgtataaatgaactatatcaccaa 11014358  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 11004677 - 11004725
Alignment:
Q  298 acttgatcaaagcccgtgatactacttcatgaacaaactattccaaaag 346  Q
    |||||||||||||| ||||||| | |||||||||||||||| |||||||    
T  11004677 acttgatcaaagcctgtgataccatttcatgaacaaactatgccaaaag 11004725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 368
Target Start/End: Original strand, 11023531 - 11023586
Alignment:
Q  313 gtgatactacttcatgaacaaactattccaaaagtttaagctattcagtaaagaca 368  Q
    ||||||| | ||||| |||||||||| |||||||||||||||||| ||| ||||||    
T  11023531 gtgataccatttcatcaacaaactatgccaaaagtttaagctattaagtgaagaca 11023586  T

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