View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_25 (Length: 461)
Name: NF16592_high_25
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 53491916 - 53492346
Alignment:
| Q |
15 |
atcaaaagcggtgaacgttttacacattaaatgtgtgactggctaatgggtatacagcatttcatgcacaaacgtgtgtgatgatatcatttgggtgggc |
114 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491916 |
atcaaaggcggtgaacgttttacacattaaatgtgtgactggctaatgggtatacagcatttcatgcacaaacgtgtgtgatgatatcatttgggtgggc |
53492015 |
T |
|
| Q |
115 |
attataccaaaccaaccatgtctttactttacccactcgctcctaattcaagaccaacttctcaaccctatactatacgtatcttcaatctcaagtgaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492016 |
attataccaaaccaaccatgtctttactttacccactcactcctaattcatgaccaacttctcaaccctatactatacgtatcttcaatctcaagtgaac |
53492115 |
T |
|
| Q |
215 |
ctttttgttactttcctctcttatgcaccctataaatacatgacattccatctttgcaatatcacatcaacaaaaaataaatccattccattcttttagt |
314 |
Q |
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| T |
53492116 |
ctttttgttactttcctctcttatgcaccctataaatacatgacattccatctttgcaatatcacatcaacaaaaaataaatccattccattcttttagt |
53492215 |
T |
|
| Q |
315 |
atttgaatcagcttataaatattcaatggctttttcaaaatttctcacattcctagtcatttttatttctgaggttgcaattgcctctgctggcaatttt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53492216 |
atttgaatcagcttataaatattcaatggctttttcaaaatttgtcacattcctggtcatttttatttctacggttgcaattgcctctgctggcaatttt |
53492315 |
T |
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| Q |
415 |
tatcaagactttgatataacatggggggatg |
445 |
Q |
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| T |
53492316 |
tatcaagactttgatataacatggggggatg |
53492346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 37187888 - 37188031
Alignment:
| Q |
15 |
atcaaaagcggtgaacgttttacacattaaatgtgtgactggctaatgggtatacagcatttcatgcacaaacgtgtgtgatgatatcatttgggtgggc |
114 |
Q |
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|||||| |||||||| ||||| |||||||| ||| || ||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
37187888 |
atcaaaggcggtgaatgttttgcacattaattgtatggctggctattgggtatacagcatttcatgcacaaccgcgtgtgatgatatcatttgggtgggc |
37187987 |
T |
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| Q |
115 |
at-----tataccaaa-ccaaccatgtctttactttacccactc |
152 |
Q |
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| T |
37187988 |
atccacctataccaaatccaaccatgcctttactttacccactc |
37188031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 361 - 445
Target Start/End: Original strand, 37188224 - 37188308
Alignment:
| Q |
361 |
acattcctagtcatttttatttctgaggttgcaattgcctctgctggcaatttttatcaagactttgatataacatggggggatg |
445 |
Q |
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||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37188224 |
acattcctagtcattttaatctctacggttgcaattgcctctgctggcaatttttatcaagactttgatataacatggggggatg |
37188308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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