View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_35 (Length: 398)
Name: NF16592_high_35
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 11715670 - 11716058
Alignment:
| Q |
1 |
catatattcgagcattccaatcatgttcttcagaggcgttacacttttcgagttcttttctaatgggagatactgctggatttcccttccaaaatgcata |
100 |
Q |
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| T |
11715670 |
catatattcgagcattccaatcatgttcttcggaggcgttacacttttcgagttcttttctaatgggagatactgctggatttcccttccaaaatgcata |
11715769 |
T |
|
| Q |
101 |
aggtgttctatccttccatttgacattcctgttgccttcttgtatattgcgcaatgttgtttcccatggtcttatgtggagctcagccctaacatgnnnn |
200 |
Q |
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| T |
11715770 |
aggtgttctatccttccatttgacattcttgttgccttcttgtatattgcgcaatgttgtttcccatggtcttatgtggagctcagccctaacatg-aaa |
11715868 |
T |
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| Q |
201 |
nnnntgtaaactgtaagttttgttttccttttatttcactttaattagatgaaacaacaatgatattaatccttgcatgatagttatgcttccatgcaca |
300 |
Q |
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| T |
11715869 |
aaaatgtaaactataa-ttttgttttccttttatttcactttaattagatgaaacaacaatgatattaatccttgcatgatagttatgcttccatgcaca |
11715967 |
T |
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| Q |
301 |
aataatcataaatccaattaaagggaatagaagctttaccaaccccagaaggtccaatcaggaaaaacaatgtcaagtgtatcttcatctc |
391 |
Q |
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| T |
11715968 |
aataatcataaatccaattaaagggaatagaagctttaccaaccccagaaggtccaatcaggaaaaacaatgtcaagtgtatcttcatctc |
11716058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 29039637 - 29039571
Alignment:
| Q |
81 |
tttcccttccaaaatgcataaggtgttctatccttccatttgacattcctgttgccttcttgtatat |
147 |
Q |
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| T |
29039637 |
tttcctttccaaaaagcatagggtatcctatccttccatttgatcttcttgttgctttcttgtatat |
29039571 |
T |
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