View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_37 (Length: 393)
Name: NF16592_high_37
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 27939298 - 27939654
Alignment:
| Q |
20 |
aaaccattctccatctcatcatcaagaacatcacgattacgctccaccattgttctccttcccctatgtgtgatgttcaactgtgaagaggaaccctcac |
119 |
Q |
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| T |
27939298 |
aaaccattctccatctcatcatcaagaacatcgcgattacgctccaccattgttctccttcccctatgtgtgatgttcaactgtgaagaggaaccctcac |
27939397 |
T |
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| Q |
120 |
taatgatcccatcaaatgttaagtaaagcatatcgcacgatttagaattgatcgatcgttggtggaccctactatgtgaattataagtaggggacaaaat |
219 |
Q |
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| T |
27939398 |
taatgatcccatcaaatgttaagtaaagcatatcacacgatttagaattgatcgatcgttggtggaccctactatgtgaattataagtaggggacaaaat |
27939497 |
T |
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| Q |
220 |
tatttggtgatctaacctatgttctccaatgacaccctcgctccttgcatttctagaattattactatcgaaagatctcctagatgacgacacttcatta |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27939498 |
tatttggtgatctaacctatgttctccaatgacaccctcactccttgcatttctagaattattactatcgaaagatctcctagatgacgacacttcatta |
27939597 |
T |
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| Q |
320 |
ttctccaaagcattaatttgtaacaaaccattatcccgcttttccattgaggacact |
376 |
Q |
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||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||| |
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| T |
27939598 |
ttctccaaagcattaatttgtgacaaaccactatctcgcttttccattgaagacact |
27939654 |
T |
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