View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_40 (Length: 382)
Name: NF16592_high_40
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 45129871 - 45129511
Alignment:
| Q |
18 |
tggaaacaccagttggagttggattttcttatgttaaaggtagttctgcttataccacaacagtaaatgacgacgaaacaggtattcattattattgaat |
117 |
Q |
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| T |
45129871 |
tggaaacaccagctggagttggattttcttatgttaaaggtagttctgcttataccacaacagtaaatgacgacgaaacaggtattcattattattgaat |
45129772 |
T |
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| Q |
118 |
ctttttggtacttaaaatgtttcatctttagaaacttcttttaaatcctacttctataggaaaaa--gtagtatatcttatgtttttatactttcttagg |
215 |
Q |
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| T |
45129771 |
ctttttggtactaaaaatgtttcatctttagaaacttcttttaaatcctacttctataggaaaaaaagtagtatatcttatgtttttatactttcttagg |
45129672 |
T |
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| Q |
216 |
ctttttaaaagtttagataaagataaaacagtgatttattgtaaaaatgtctctaacttttgtgtcaaactttacattattattctccatgtcttattat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45129671 |
ctttttaaaagtttagataaagataaaacagtgatttattgtaaaaatgtctctaacttttgtatcaaactttacattattattctccatgtcttattat |
45129572 |
T |
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| Q |
316 |
ctactcaaagtcaaacattaacatgttatatacttttgatatcagtatgatgatgatgatg |
376 |
Q |
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| T |
45129571 |
ctactcaaagtcaaacattaacatgttatatacttttgatatcagtatgatgatgatgatg |
45129511 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 40281892 - 40281848
Alignment:
| Q |
18 |
tggaaacaccagttggagttggattttcttatgttaaaggtagtt |
62 |
Q |
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| T |
40281892 |
tggagacaccagttggagtggggttttcttatgctaaaggtagtt |
40281848 |
T |
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