View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_41 (Length: 382)
Name: NF16592_high_41
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 366
Target Start/End: Complemental strand, 6067567 - 6067207
Alignment:
| Q |
8 |
cgaagaatattttgtatttatttcattgacttagtttcttttgttgttgtagacaacttcattagcttagtcatttcaagaacatttgccaaaaattatg |
107 |
Q |
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| T |
6067567 |
cgaaaaatattttgtatttatttcattgacttagtttcttttgttgttgtggacaacttcattagcttagtcatttcaagaacatttgccaaaaattatg |
6067468 |
T |
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| Q |
108 |
atatccaactatgtgtttgttcatgtctgcgtacactccagctatgtttctgtcatctatcta---tacttattctaaataagatatccaaagcttattg |
204 |
Q |
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| T |
6067467 |
atatccaactatgtgtttgttcatgtctgcgtacactccaactatgtttctgtcatctatctatactacttattctaaataagatatccaaagcttattg |
6067368 |
T |
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| Q |
205 |
attaaagaaaattttctgagcnnnnnnntgattagttctgtgtggtcaatacaagctacttacaaggatgcactggtattttgcagatgcatcttatttt |
304 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6067367 |
attaaagaaaattttctgagcaaaaaaatgattagttctgtgtggtcaatacaagctacttacaaggatgcactggtattttgcagatgcatcttatttt |
6067268 |
T |
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| Q |
305 |
attgagttcacataatttagtaagtatgacaaatcacataaaatactttttacatggataat |
366 |
Q |
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| T |
6067267 |
attgagttcacataatttagtaagtatgacaaatcacataaaatac-ttttacatggataat |
6067207 |
T |
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