View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_42 (Length: 377)
Name: NF16592_high_42
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 41863469 - 41863116
Alignment:
| Q |
10 |
attatactaataatcacatatatatctaaattaataaaataatatttttggatttatttaccttcaatgatgattcatctttagcccagtttctttctag |
109 |
Q |
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| T |
41863469 |
attatactaataatcacatatatatctaaattaataaaataatattttttgatttatttaccttcaatgatgattcatctttagcccagtttctttctag |
41863370 |
T |
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| Q |
110 |
aaataaatattcagcaaaccacattgaccaacctataacctgcatagatattgcaatgttgttactggaacaaatcatttaaattaattaaaagccttaa |
209 |
Q |
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| T |
41863369 |
aaataaatattcagcaaaccacattgaccaacctataacctgcatagatattgcaatgttgttactggaacaaatcatttaaattaattaaaagccttaa |
41863270 |
T |
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| Q |
210 |
tgtaattctaaatctacaaagaacaaagaaagagaggtttagagaaacatacagggaggtatttaaattctttcttcataatggctatcgtgctaccaag |
309 |
Q |
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| T |
41863269 |
tgtaattctaaatctacaaagaacaaagaaagagaggtttagagaaacatacagggaggtatttaaattctttcttcataatggctatcgtgctaccaag |
41863170 |
T |
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| Q |
310 |
gcaacccgtgcgctgtgacaaacgcgaaagaaatagaatataagaactatatga |
363 |
Q |
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| T |
41863169 |
gcaacccgtgcgctgtgacaaacgcgaaagaaatagaatataagaactatatga |
41863116 |
T |
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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 42121986 - 42122079
Alignment:
| Q |
65 |
atttaccttcaatgatgattcatctttagcccagtttctttctagaaataaatattcagcaaaccacattgaccaacctataacctgcatagat |
158 |
Q |
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| T |
42121986 |
atttaccttcagtgttagttcatccttagcccaatttctttccagaaataaaaaatcagcaaaccacattgaccaacctagaacctgcacagat |
42122079 |
T |
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