View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_46 (Length: 369)
Name: NF16592_high_46
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_46 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 41896792 - 41896534
Alignment:
| Q |
11 |
aagaaagcaattccaaagtctcggaccgctgattacaaatatcgttactttctccgtaatacggttctcataaataaatttagcaatttttatcatattc |
110 |
Q |
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| T |
41896792 |
aagaaagcaattccaaagtctcggaccgctgattacaaatatcgttactttctccgtaatacgtttctcataaataaatttagcaatttttatcatattc |
41896693 |
T |
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| Q |
111 |
ttcataaaatatttgaatgcatatttactattattgattattttatgaattgtgttacagtttacaagaggccatttagtgaagaatttatgaaattctg |
210 |
Q |
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| T |
41896692 |
ttcataaagtatttgaatgcatatttactattattgattattttatgaattgtgttacagtttacaagaggccatttagtgaagaatttatgaaattctg |
41896593 |
T |
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| Q |
211 |
cttagaaagatttgaagtgggggtttggtcttctgcaatggagtcagtaacactcttct |
269 |
Q |
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| T |
41896592 |
cttagaaagatttgaagtgggggtttggtcttctgcaatggagtcagtaacactcttct |
41896534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 41829059 - 41829151
Alignment:
| Q |
168 |
cagtttacaagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagtgggggtttggtcttctgcaatggagtcagtaa |
260 |
Q |
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| T |
41829059 |
cagttttcaagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttctgcaaagaagtcagtaa |
41829151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 41885653 - 41885561
Alignment:
| Q |
168 |
cagtttacaagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagtgggggtttggtcttctgcaatggagtcagtaa |
260 |
Q |
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| T |
41885653 |
cagttttcaagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttctgcaaagaagtcagtaa |
41885561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 122 - 269
Target Start/End: Complemental strand, 41891943 - 41891796
Alignment:
| Q |
122 |
tttgaatgcatatttactattattgattattttatgaattgtgttacagtttacaagaggccatttagtgaagaatttatgaaattctgcttagaaagat |
221 |
Q |
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| T |
41891943 |
tttgaatgcatacttatcattgattattattttctgaactgtgttaaaggttacaagagaccatttactgaagaatttatgaaattctgcttagaaagat |
41891844 |
T |
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| Q |
222 |
ttgaagtgggggtttggtcttctgcaatggagtcagtaacactcttct |
269 |
Q |
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| T |
41891843 |
ttgaagtgggcctctggtcttctagatccgagttagtaacactcttct |
41891796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 41901660 - 41901575
Alignment:
| Q |
176 |
aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagtgggggtttggtcttctgcaatggagtcagtaac |
261 |
Q |
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| T |
41901660 |
aagaggccatttagcgaagaatttattaaattctgcttggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaac |
41901575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 34453742 - 34453822
Alignment:
| Q |
168 |
cagtttacaagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagtgggggtttggtcttctgcaa |
248 |
Q |
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| T |
34453742 |
cagttttcaagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttgtgcaa |
34453822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 41893622 - 41893545
Alignment:
| Q |
5 |
agtgagaagaaagcaattccaaagtctcggaccgctgattacaaatatcgttactttctccgtaatacggttctcata |
82 |
Q |
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| T |
41893622 |
agtgataagaaagcaattccaaagtctcgaactgctgatcacgaatatcgttactttctccgtaatacatttctcata |
41893545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 41896497 - 41896446
Alignment:
| Q |
306 |
cttacactgtatcccttctgttacactaaatgcagacataatgttgatggtg |
357 |
Q |
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| T |
41896497 |
cttacactgtatcccttttgttacactaaatgcagacataatgttgatggtg |
41896446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 41901838 - 41901773
Alignment:
| Q |
6 |
gtgagaagaaagcaattccaaagtctcggaccgctgattacaaatatcgttactttctccgtaata |
71 |
Q |
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| T |
41901838 |
gtgataagaaagcaattccaaagtctcgaactgctgattacaaatatccttactttctacgtaata |
41901773 |
T |
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