View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_high_64 (Length: 313)
Name: NF16592_high_64
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_64 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 17156137 - 17155842
Alignment:
| Q |
1 |
tgtttattcagcaaagaacatgactggatcctctccggtgacaggagaggtccagtgaaatcttgaccatttaaattaaaagtgttattaataaacatat |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17156137 |
tgtttattcagcaaagaacgggactggatcctctctagtgacaggagaggtccagtgaaatcttggccatttaaattaaaagtgttattaataaacatat |
17156038 |
T |
|
| Q |
101 |
gagagataaagcattaaagggtgtagattttcacatgagaaaactacagagaaatttactagagggaatcctctcccgcaaagaacttccaaaaatataa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17156037 |
gagagataaaacattaaagggtgtagattttcacatgagaaaactacagag-aatttatcggagggaatcctctcccgcaaaaaacttccaaaaatataa |
17155939 |
T |
|
| Q |
201 |
gaaaataattagtgagttgctattgatttctaatttggaatttaagatttcgataggtgtaaatttaaaatgactattgctttttacactctattcat |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17155938 |
gaaaataattagtgagttgctattgatttctcatttggattttaagatttcgattggtataaatttaaaat-actattgctttttacactctattcat |
17155842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 8814211 - 8814065
Alignment:
| Q |
25 |
tggatcctctccggtgacaggagaggtccagtgaaatcttgaccatttaaattaaaagtgttattaataaacatatgagagataaagcattaaagggtgt |
124 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
8814211 |
tggatcctctccagtgacaggagaggtctagtgaaatcttggccatttaaaataaaaaggttattaataaacatatgagagataaaccattaaaggatgt |
8814112 |
T |
|
| Q |
125 |
agattttcacatgagaaaactacagagaaatttactagagggaatcc |
171 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8814111 |
agattttcacatgagaaaactgtagagaaatttactagagggaatcc |
8814065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 13393402 - 13393554
Alignment:
| Q |
25 |
tggatcctctccggtgacaggagaggtccagtgaaatcttgaccatttaaattaaaagtgttattaataaacatatgagagataaagcattaaagggtgt |
124 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||| |
|
|
| T |
13393402 |
tggatcctctccagtgacacgagaggtccagtgaaatcttggtcatttaaattaaaaggattattaataaatatatgagagataaaacattaaaggatgt |
13393501 |
T |
|
| Q |
125 |
agattttcacatgagaaaactacagagaaatttactagagggaatcctctccc |
177 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||| | |||||||||||||||| |
|
|
| T |
13393502 |
agattttcacatgagaatactgcagggaaatttattggagggaatcctctccc |
13393554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 12773 - 12920
Alignment:
| Q |
22 |
gactggatcctctccggtgacaggagaggtccagtgaaatcttgaccatttaaattaaaagtgttattaataaacatatgagagataaagcattaaaggg |
121 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||| ||||||||| |||||| ||||| |||||||||||| ||| ||| |||||||||| |
|
|
| T |
12773 |
gactggatcctctccaatgacaggagaggtccactgaaatcttggccatttaaaataaaaggtttattgataaacatatgatagagaaaacattaaaggg |
12872 |
T |
|
| Q |
122 |
tgtagattttcacatgagaaaactacagagaaatttactagagggaatcct |
172 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
12873 |
tgtagattttcacatgagaaaatt---gggaaatttactagagggaatcct |
12920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 37032693 - 37032780
Alignment:
| Q |
22 |
gactggatcctctccggtgacaggagaggtccagtgaaatcttgaccatttaaattaaaagtgttattaataaacatatgagagataa |
109 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
37032693 |
gactggatccgctcgagtgacaggagaggtccaatgaaattttgaccatttaaattaaaagggttattaataaacatacgagagataa |
37032780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 34881990 - 34881871
Alignment:
| Q |
24 |
ctggatcctctccggtgacaggagaggtccagtgaaatcttgaccatttaaattaaaagtgttattaataaacatatgagagataaagcattaaagggtg |
123 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| ||| ||||||||| |||||| ||||| ||||| ||||||||| ||| |||||||| | |
|
|
| T |
34881990 |
ctggatcctctccggtgatagaagaggtccagtgaaattttggccatttaaaataaaagatttattgataaatatatgagag--aaaacattaaagacgg |
34881893 |
T |
|
| Q |
124 |
tagattttcacatgagaaaact |
145 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34881892 |
tagattttcacatgagaaaact |
34881871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 21430034 - 21430156
Alignment:
| Q |
56 |
tgaaatcttgaccatttaaatt-aaaagtgttattaataaacatatgagagataaagcattaaagggtgtagattttcacatgagaaaactacagagaaa |
154 |
Q |
| |
|
|||||||||| | |||||||| ||||| ||||||||||| |||| ||||||||| |||||| ||||||||||||||||||||||||||| | ||||| |
|
|
| T |
21430034 |
tgaaatcttggtcttttaaattcaaaagggttattaataagtatataagagataaaatattaaaaggtgtagattttcacatgagaaaactagaaagaaa |
21430133 |
T |
|
| Q |
155 |
tttactagagggaatcctctccc |
177 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
21430134 |
tttacaggagggaatcctctccc |
21430156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University