View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_68 (Length: 295)
Name: NF16592_high_68
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_68 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 295
Target Start/End: Original strand, 11225445 - 11225723
Alignment:
| Q |
10 |
tatacttttgggtgtgttggttgattaaatgttgtgcatgtagtacaagtgttacacattgttgacaaaattctgagaattgattgtaaaatcaaaatta |
109 |
Q |
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| T |
11225445 |
tatacttttgggtgtgttggttgattaaatgttgtgcatgtagtacaagtgttacgcattcttgacaaaattctgagaactgattgtaaaatcaaaatta |
11225544 |
T |
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| Q |
110 |
tgcgaactgattgcttgatgtatttctgattgtaagttgattgtttaactgctcattctacaaactgattgtaaataaatgagttgtatgtagaattttg |
209 |
Q |
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| T |
11225545 |
tgcgaactgattgtttgatgtatttctgattgtaagttgattgtttaactgctcattctacaaactgattgtaaat-aatgagttgtatgtagaattttg |
11225643 |
T |
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| Q |
210 |
tttaacaatcagttatggttttttaaaactcattctgctcattatgtttaacatatataaaagg-aaaggttatgctcattctgctt |
295 |
Q |
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| T |
11225644 |
tttaacaatcagttatggtttttttaaac-------gctcattatgtttaacatatataaaaggaaaagattatgctcattctgctt |
11225723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 11225254 - 11225401
Alignment:
| Q |
10 |
tatacttttgggtgtgttggttgattaaatgttgtgcatgtagtacaagtgttacacattgttgacaaaattctgagaattgattgtaaaatcaaaatta |
109 |
Q |
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| T |
11225254 |
tatacttttgggtgtgttgattgattaaatgttatgcatgtactataagtgttgcacattgttgataaaattctggaaactgattgtaaaatcaaaattt |
11225353 |
T |
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| Q |
110 |
tgcgaactgattgcttgatgtatttctgattgtaagttgattgtttaa |
157 |
Q |
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| T |
11225354 |
tgtgaactgattgtttaatgtgtacctgaatgtaagctgattatttaa |
11225401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 11224902 - 11225048
Alignment:
| Q |
10 |
tatacttttgggtgtgttg-gttgattaaatgttgtgcatgtagtacaagtgttacacattgttgacaaaattctgagaattgattgtaaaatcaaaatt |
108 |
Q |
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| T |
11224902 |
tatacttttgggtgtgttaagttgattaaatgttgtgcatgtagtataagagttacacattgttga-aatattctgcgaactgattacaaaatcaaaatt |
11225000 |
T |
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| Q |
109 |
atgcgaactgattgcttgatgtatttctgattgtaagttgattgtttaa |
157 |
Q |
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| T |
11225001 |
ctg-aaattgattgtttaatgtttacctgattgtaagctgattgtttaa |
11225048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 11225092 - 11225156
Alignment:
| Q |
10 |
tatacttttgggtgtgttggttgattaaatgttgtgcatgtagtacaagtgttacacattgttga |
74 |
Q |
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| T |
11225092 |
tatactttaaggcgtgttggttgattatatgttgttcatgtagtataagagttacacattgttga |
11225156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 139 - 272
Target Start/End: Original strand, 3072165 - 3072298
Alignment:
| Q |
139 |
ttgtaagttgattgtttaactgctcattctacaaactgattgtaaataaatgagttgtatgtagaattttgtttaacaatcagttatggttttttaaaac |
238 |
Q |
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| T |
3072165 |
ttgtaagttgattgtttaactgcacattctacaaattgattgcaaataaatgaacaatttatagaattttgtttaacaattagttatagtctttttaatc |
3072264 |
T |
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| Q |
239 |
tcattctgctcattatgtttaacatatataaaag |
272 |
Q |
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| T |
3072265 |
tcattttgcccattctttttaacatatataaaag |
3072298 |
T |
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