View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_69 (Length: 290)
Name: NF16592_high_69
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_69 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 38750745 - 38750485
Alignment:
| Q |
13 |
gtgagaagaaacacagataaaatagtgattaacaacaatcatannnnnnn-ctcaaccatttccttcaattccataattgggaaattttctttgctactt |
111 |
Q |
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| T |
38750745 |
gtgacaagaaacacagataaaatagtgattaacaacaatcatattttttttctcaaccatttccttcaattccataattgggaaattttctttgctactt |
38750646 |
T |
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| Q |
112 |
attcttcaaagaactttcaagtaactactggaagcaacactaagagttgtatacttattgtaactcaataatttgattataaaacataaataacagtatt |
211 |
Q |
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| T |
38750645 |
attcttcaaagaactttcaagtaactactggaagcaacactaagagttgtatacttattgtaactcaataatttgattataaaacataaataacagtatt |
38750546 |
T |
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| Q |
212 |
agtgtctcccaaataatgcttcacaatatgattatttaaattattgatgcatataactttg |
272 |
Q |
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| T |
38750545 |
agtgtctcccaaataatgcttcacaaattgattatttaaattattgatgcatagaactttg |
38750485 |
T |
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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 95 - 264
Target Start/End: Original strand, 3021739 - 3021919
Alignment:
| Q |
95 |
aattttctttgctacttattcttcaaagaactttcaagtaactactggaa-------gcaacactaagagttgtatacttattgtaactcaataatttga |
187 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| |||||| | |||||||| ||||| | |||||||||| |
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| T |
3021739 |
aattttcttggctacttaatcttcaaagaactttcaagtaactactggaaaaatgaagcaatactaaggatggtatacttgttgtatcccaataatttgt |
3021838 |
T |
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| Q |
188 |
ttataaaacataaataacagtat---tagtgtctcccaa-ataatgcttcacaatatgattatttaaattattgatgcata |
264 |
Q |
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| T |
3021839 |
ttataaaacataaataacagtattaatagtgtctcacaatataatgtttcacaaattcattatttaaattattgatacata |
3021919 |
T |
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