View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_72 (Length: 286)
Name: NF16592_high_72
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_72 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 28666070 - 28665846
Alignment:
| Q |
18 |
aattaatgtatgactttttgtaggtagttgaggatgatacattcccagatggaacaatactnnnnnnnggtacaaaagtgatctatgcaatttatgcaat |
117 |
Q |
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| T |
28666070 |
aattaatgtatgactttttgtaggtagttgaggatgatacattcccagatggaacaatactaaaaaaaggtacaaaagtgatctatgcaatttatgcaat |
28665971 |
T |
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| Q |
118 |
ggggagaatggaaagcatatggggaaaagactgcagggagtttaaacctgaaagatggttaaaagatggtcgttttatgagtgaatctgcgtacaaattc |
217 |
Q |
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| T |
28665970 |
ggggagaatggaaagcatatggggaaaagactgcagagagtttaaacctgaaagatggttaaaagatggtcgttttatgagtgaatctgcgtacaaattc |
28665871 |
T |
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| Q |
218 |
actgcatttaatggcggacctcggt |
242 |
Q |
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| T |
28665870 |
actgcatttaatggcggacctcggt |
28665846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 13888641 - 13888831
Alignment:
| Q |
50 |
gatgatacattcccagatggaacaatactnnnnnnnggtacaaaagtgatctatgcaatttatgcaatggggagaatggaaagcatatggggaaaagact |
149 |
Q |
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| T |
13888641 |
gatgacacatttccagatggaacaaaactaaaaaaaggaacaaaaattatatatgcaatatattcaatgggaagaatggaaagcatatggggaaaagatt |
13888740 |
T |
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| Q |
150 |
gcagggagtttaaacctgaaagatggtta---aaagatggtcgttttatgagtgaatctgcgtacaaattcactgcatttaatggcggacc |
237 |
Q |
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| T |
13888741 |
gcttggagttcaagccagaaagatggttaactaaagatggtcatttcatcggtgaatctgcgtacaaattcactgctttcaatggaggacc |
13888831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 13896024 - 13895873
Alignment:
| Q |
89 |
acaaaagtgatctatgcaatttatgcaatggggagaatggaaagcatatggggaaaagactgcagggagtttaaacctgaaagatggttaa---aagatg |
185 |
Q |
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| T |
13896024 |
acaaaagttatatatgcaatatattcaatgggaagaatggaaaacatatggggaaaagattgcttggagttcaagccagaaagatggttaaccgaagatg |
13895925 |
T |
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| Q |
186 |
gtcgttttatgagtgaatctgcgtacaaattcactgcatttaatggcggacc |
237 |
Q |
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| T |
13895924 |
gtcatttcatgagcgaatctgcctacaaattcacagcttttaatggaggacc |
13895873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 13893159 - 13893215
Alignment:
| Q |
89 |
acaaaagtgatctatgcaatttatgcaatggggagaatggaaagcatatggggaaaa |
145 |
Q |
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| T |
13893159 |
acaaaagtgatacatgcaatttatttaatgggaagaatggaaaatatatggggaaaa |
13893215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 1034016 - 1033865
Alignment:
| Q |
89 |
acaaaagtgatctatgcaatttatgcaatggggagaatggaaagcatatggggaaaagactgcagggagtttaaacctgaaagatggtta---aaagatg |
185 |
Q |
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||||||||||| |||||||||||| | ||||| |||||||||| ||||| |||||||| ||| |||||| || || |||||||||||| ||||||| |
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| T |
1034016 |
acaaaagtgatatatgcaatttattccatgggaagaatggaaaatatatgaggaaaagattgcttggagttcaagccagaaagatggttaactaaagatg |
1033917 |
T |
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| Q |
186 |
gtcgttttatgagtgaatctgcgtacaaattcactgcatttaatggcggacc |
237 |
Q |
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||| ||| ||||| | || ||| |||||||| ||||| |||||||| ||||| |
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| T |
1033916 |
gtcatttcatgagcgtatttgcctacaaatttactgcttttaatggaggacc |
1033865 |
T |
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