View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_high_74 (Length: 285)
Name: NF16592_high_74
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_74 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 26263590 - 26263337
Alignment:
| Q |
20 |
aactaagccttgtaagagctaacaagattgatatttgaacacaccttatattttttaacacttattcaacacctagcttgatttctatttctctctttct |
119 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26263590 |
aactaagccttgtaagagctaacaagaatgatatttgaacacg--ttatattttttaacacttattcaacacctagcttgatttctatttctctctttct |
26263493 |
T |
|
| Q |
120 |
atcacttcacggagtattatatctatcatatcactctatatatcttctccctcaaaatgtatacatctatatagaatgctcaccaatcattttccaacaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26263492 |
atcacttcacggagtattatatctatcatgtcactctatatatcttctccctcaaaatgtatacatctatatagaatgctcaccaatcattttccaataa |
26263393 |
T |
|
| Q |
220 |
ccacattcnnnnnnnnaagagagataaactttaggccattatttttccatcctatg |
275 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26263392 |
ccacattcttttttttatgagagataaactttaggccattatttttccatcctatg |
26263337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University