View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_91 (Length: 251)
Name: NF16592_high_91
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_91 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 11478113 - 11478353
Alignment:
| Q |
1 |
accctcccttgaggatccaaaacaacaagaatcggcttattcttgtatttccattcactctgtatgaaccaaacaactgccttgcttatcaatgaaggat |
100 |
Q |
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| T |
11478113 |
accctcccttgaggatccaaaacaacaagaatcggcttattcttgtatttccattcactctgtatgaaccaaacaactgccttgcttatcaatgaaggat |
11478212 |
T |
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| Q |
101 |
gatacaccgaaaaccatggcatactctctctcagattctcaaattgcatttgcttttggtctgtccattcagatgtttggtccacaattgggatccaaac |
200 |
Q |
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| T |
11478213 |
gatacaccgaaaaccatggcatactctctctcagattctcaaattgcatttgcttttggtctgtccattcagatgtttggtccactattgggatccaaac |
11478312 |
T |
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| Q |
201 |
tagttcatatctattgtcttgtctcggtgcgtgcgcctttg |
241 |
Q |
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| T |
11478313 |
tagttcatatctattgtcttgtctcggtgcatgcgcctttg |
11478353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 11507738 - 11507889
Alignment:
| Q |
1 |
accctcccttgaggatccaaaacaacaagaatcggcttattcttgtatttccattcactctgtatgaaccaaacaactgccttgcttatcaatgaaggat |
100 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11507738 |
acccgcccttgaggatccaaaacaacaagaattggcttattcttgtatttcgattcactctgtatgaaccaaaccactgccttgcttatcaatgaaggat |
11507837 |
T |
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| Q |
101 |
gatacaccgaaaaccatggcatactctctctcagattctcaaattgcatttg |
152 |
Q |
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| T |
11507838 |
gatacattgaaaaccatggcatacattctctttggttctaaaattgcatttg |
11507889 |
T |
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