View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_high_95 (Length: 242)
Name: NF16592_high_95
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_high_95 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 31822035 - 31822253
Alignment:
| Q |
1 |
agatacactcaagaaaggtgtatggtggagacgaaataatctcaagaagatatggctttaagctttgagaagacaatatgagatgattcaaatgaatgaa |
100 |
Q |
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| T |
31822035 |
agatacactcaagaaaggtgtatggtggagacaaaataatctcaagaagatatggctttaagctttgagaagacaatatgagatgatccagatgaatgaa |
31822134 |
T |
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| Q |
101 |
gctgaatcatatgcataaattcttattaagattggagatgctaactaattagccaaatgaaggatttggtgaatgttgagtttctgagaatttggagaat |
200 |
Q |
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|||||||||| ||||| ||||||| | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
31822135 |
gctgaatcatttgcat-aattcttctcaagattggtgatgctaactaattagccaaatgaaggatatggtgaatgttgagtttatgagaatttggagaat |
31822233 |
T |
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| Q |
201 |
tagagccaaaagaaccataa |
220 |
Q |
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||||||||||||| |||||| |
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| T |
31822234 |
tagagccaaaagagccataa |
31822253 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 27737994 - 27737946
Alignment:
| Q |
174 |
tgttgagtttctgagaatttggagaattagagccaaaagaaccataagg |
222 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||| |||||||| |
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| T |
27737994 |
tgttgagtttttgagaatttggagaattagagccaatagagccataagg |
27737946 |
T |
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